Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1386 325 5e-84 seq7110 289 4e-73 seq1508 140 4e-28 seq8888 132 6e-26 seq1453 102 1e-16 seq5999 84.2 3e-11 >seq1386 Length=4420875 Score = 325 bits (360), Expect = 5e-84 Identities = 546/792 (69%), Gaps = 42/792 (5%) Strand=Plus/Plus Query 32492 TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 32551 ||| ||||| || ||||| || || ||||||| |||||||| || || || || Sbjct 837342 TCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 837401 Query 32552 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 32611 ||||| || ||| | || || || || ||||| || || || | || || | Sbjct 837402 CACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATTATTTA 837461 Query 32612 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 32671 | | ||| | | || ||| | | | ||||| ||||||| || || || || Sbjct 837462 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTC 837521 Query 32672 GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 32731 ||||||| |||||||||||| ||||| | ||| |||||||| ||||| |||||||| || Sbjct 837522 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAG 837581 Query 32732 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTAC 32791 || || ||||| ||||| ||||| || ||||| || ||||||||||| |||||||| || Sbjct 837582 ACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 837641 Query 32792 TGCCGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCGC----TGTCAT---GT----- 32837 ||| |||||||| | | | ||||||| || || | || ||| || Sbjct 837642 TGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTGGAG 837701 Query 32838 -----------AT-CCACTTTT-----GA-----------GCCCAATCGGCCTTCTTTTT 32869 || || |||| || |||||||| |||||||| || Sbjct 837702 AACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTT 837761 Query 32870 TACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 32929 |||||||||||||||||| ||||| || |||||| | | |||| || |||||||| Sbjct 837762 TACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAAT 837821 Query 32930 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 32989 || || ||||| | |||||||||||||| ||||| |||||||| ||||| ||| | || Sbjct 837822 GTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAA 837881 Query 32990 TCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATT 33049 || ||||| || | || || |||||||| |||||| | ||| | | | || || Sbjct 837882 GCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTAAACCAAGTT 837941 Query 33050 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 33109 |||||| ||||| || ||||| |||||||| || |||| ||||| || |||||| | Sbjct 837942 TTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGCAAAATGAAATATCT 838001 Query 33110 TTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCAC 33169 || || || | || | ||| | | || || || || | ||||| ||||| | Sbjct 838002 CTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGC 838061 Query 33170 TGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 33229 ||||||||| || ||||| || || |||||||| | ||| || ||||| |||| || || Sbjct 838062 TGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGG 838121 Query 33230 AAAAATAACAAA 33241 ||| || ||||| Sbjct 838122 AAAGATGACAAA 838133 >seq7110 Length=16720443 Score = 289 bits (320), Expect = 4e-73 Identities = 619/927 (67%), Gaps = 42/927 (5%) Strand=Plus/Minus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| |||||||| | || || || || || | || || | || ||||| || ||| Sbjct 13122559 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 13122500 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474 || | ||| ||||| ||||| || || |||||||| || | ||| || |||| Sbjct 13122499 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 13122440 Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 |||| || || | ||| ||||| || ||||| || || ||||||| ||| Sbjct 13122439 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 13122380 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 ||||| || || || || |||| || ||| | || || || || ||||| || || Sbjct 13122379 TTCATCCCAATGAGCTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 13122320 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 32654 || | || || || | ||| | | || ||| | | | ||||| ||| Sbjct 13122319 GCATTGACGATTATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 13122260 Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 |||| || || || || ||||||| |||||||||||| ||||| | ||| |||||||| Sbjct 13122259 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 13122200 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774 ||||| |||||||| || || || || || ||||| ||||| || ||||| || |||||| Sbjct 13122199 GTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 13122140 Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCGC--- 32829 ||||| |||||||| ||||| |||||||| | | | ||||||| || || | Sbjct 13122139 AAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACA 13122080 Query 32830 -TGTCAT---GT----------------AT-CCACTTTT-----GA-----------GCC 32852 || ||| || || || |||| || ||| Sbjct 13122079 ATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCC 13122020 Query 32853 CAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttt 32912 ||||| |||||||| |||||||||||||||||||| || || || |||||| | | || Sbjct 13122019 CAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTT 13121960 Query 32913 tCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 32972 || || ||||| || || || ||||| | |||||||||||||||||||| |||||| Sbjct 13121959 TCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTT 13121900 Query 32973 TCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33032 || ||||| ||||| || || ||||| | || || |||||||| |||||| | | Sbjct 13121899 TCCATGGCAATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTA 13121840 Query 33033 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33092 | | || | | |||||||| |||| |||||||| |||||| | || | || ||| Sbjct 13121839 AGCCACTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACA 13121780 Query 33093 TGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 33152 || | |||||| | | || || | || | | | | || || || || Sbjct 13121779 TGCGAAGTGAAATATCTCTACTCAGGCTTCAGGGCTTCCTGGTGCTGAATGTCCTTGGAA 13121720 Query 33153 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 33212 | ||||| || || | ||||| || || ||||| || || ||| |||| | ||| || Sbjct 13121719 AGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATA 13121660 Query 33213 TCATGATATTGAATTGGAAAAATAACA 33239 ||| | |||| || ||||| || ||| Sbjct 13121659 TCACGGTATTCGATAGGAAAGATGACA 13121633 >seq1508 Length=3848527 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 149381 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 149440 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 149441 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 149500 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 149501 CTGTTTCTTATACCATA 149517 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| |||||||||||||| | || || ||||| || || || || || | Sbjct 179969 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCGATCCTTGCTGCCAGGA 180028 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| |||| || |||||||| || | Sbjct 180029 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAGAGTATCTA 180088 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 180089 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 180134 Score = 100 bits (110), Expect = 4e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| || | || || || |||||||| || || || || || || | Sbjct 153724 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 153783 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||||| |||||| | || || ||| | || ||||| || | Sbjct 153784 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 153843 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62607 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 153844 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 153901 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 158207 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 158266 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 158267 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 158326 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 158327 AGGCTCCAGGTAAATAGC 158344 >seq8888 Length=9016713 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| ||||| | ||| |||||||| ||||| |||||||| || || || |||| Sbjct 1702276 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 1702335 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 1702336 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 1702395 Query 32803 C 32803 | Sbjct 1702396 C 1702396 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 1704272 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 1704331 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| || | || || |||||||| |||||| Sbjct 1704332 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 1704377 >seq1453 Length=4135625 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| || ||||| ||||| || || | || || Sbjct 1830590 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 1830531 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1830530 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1830472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 |||||||||||||| ||||||||||||||||||||||| || || | || |||||| Sbjct 1826285 AAATTTTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 1826226 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 33160 || || || |||| | | || || ||||| | | || ||| || |||| ||| || Sbjct 1826225 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 1826170 >seq5999 Length=11637418 Score = 84.2 bits (92), Expect = 3e-11 Identities = 236/358 (66%), Gaps = 11/358 (3%) Strand=Plus/Minus Query 30404 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGATATTGTACTTCT 30461 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 8324997 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 8324940 Query 30462 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 30521 | | |||||| | | |||| |||| | | || ||||| || |||| ||| ||| | || Sbjct 8324939 TCTATTTCTGGGTGAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 8324880 Query 30522 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 30581 || | || | ||| ||| ||||| || | || | |||||| ||||||||| Sbjct 8324879 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACAACCATTTCCTCTATAATCT 8324820 Query 30582 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 30638 || ||| | ||||| |||||| ||| || | |||| | || ||||| | ||| Sbjct 8324819 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 8324760 Query 30639 GCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGT 30698 |||| ||| |||||||| ||| | | || ||| ||||| || | | | Sbjct 8324759 GCTACTCTCCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTCA--CAAGGG 8324702 Query 30699 CTTTCTCC--TGGAGGGATAGTATAATCATAAGCGCTATATAAATCATATCCGGCAGC 30754 |||||||| || || | || |||||||| || || |||| ||||| || || || Sbjct 8324701 CTTTCTCCATAGGTGGTACTGTGTAATCATAGGCACTGTATAGGTCATAGCCCGCGGC 8324644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633546649769600