Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1386 268 1e-66 seq7110 199 4e-46 seq8888 100 3e-16 >seq1386 Length=4420875 Score = 268 bits (296), Expect = 1e-66 Identities = 555/823 (67%), Gaps = 50/823 (6%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || || || ||||| |||||||| ||||||| |||||||| || | Sbjct 837337 ATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 837396 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || || || || || || || | ||| || | || ||| ||| || | | | | Sbjct 837397 AGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATTCTAACTGCAT---TGACG 837453 Query 93038 ATT-TCTATT--ACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 ||| | |||| ||||| | | ||||| |||| | | ||| |||| | ||| Sbjct 837454 ATTATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAG 837513 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACC 93153 |||||||| |||||||| ||||||| || || || | ||||| ||||| | || Sbjct 837514 GCAAAGTCACAGTGTAAACCCTCGTCTC-TGCTAATAAGTTCATTGGAAAATGTGAGGCC 837572 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | ||| |||||||| |||||||| ||||| || |||||| ||||||||| || || Sbjct 837573 GGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGAT 837632 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAAT-TTGCGGAA--------TT 93264 |||||||| || ||||| || || | |||||| || | ||| ||| || Sbjct 837633 TCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATT 837692 Query 93265 AC---------------------------TG---CTGATCCATTTTAAAGCCCAATCGGC 93294 || || | |||||| || |||||||| || Sbjct 837693 ACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGC 837752 Query 93295 TTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGA 93354 || ||||| | |||||| | ||| || |||||||| || || | || | || | || Sbjct 837753 CTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGA 837812 Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| ||||| || || || | ||| ||||||||||||||||| || ||||| || Sbjct 837813 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 837872 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 |||| |||| || |||||||| | |||||||| ||||| |||||||| ||| || Sbjct 837873 AATTAGGAAGCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTA 837932 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 || | |||||||| ||||| ||||| ||||||||| ||||||| | |||| || Sbjct 837933 AACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGCAAAAT 837992 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGA 93593 |||| | |||| ||| || || ||||| | | || | || || ||||| || | Sbjct 837993 GAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCA 838051 Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653 | ||||| | |||||||| || || || ||||| || ||||| | ||| || || || | Sbjct 838052 CCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGT 838111 Query 93654 ATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAG 93696 ||| || ||||| |||||||| || | ||| ||||| || Sbjct 838112 ATTCGATAGGAAAGATGACAAAGCGGCGGGTGTTTTCTTTCAG 838154 >seq7110 Length=16720443 Score = 199 bits (220), Expect = 4e-46 Identities = 526/800 (66%), Gaps = 50/800 (6%) Strand=Plus/Minus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || || || ||||| |||||||| ||||||| |||||||| || | Sbjct 13122427 ATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 13122368 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || || | || || || || | ||| || | || || ||| || | | | | Sbjct 13122367 AGCTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT---TGACG 13122311 Query 93038 ATT-TCTATT--ACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 ||| | |||| ||||| | | ||||| |||| | | ||| |||| | ||| Sbjct 13122310 ATTATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAG 13122251 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACC 93153 |||||||| |||||||| ||||||| || || || | ||||| ||||| | || Sbjct 13122250 GCAAAGTCACAGTGTAAACCCTCGTCTC-TGCTAATAAGTTCATTGGAAAATGTGAGGCC 13122192 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | ||||||||||||||||||||| ||||| || |||||| ||||||||| || || Sbjct 13122191 GGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGAT 13122132 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAAT-TTGCGGAA--------TT 93264 |||||||| || ||||| || || | |||||| || | ||| ||| || Sbjct 13122131 TCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATT 13122072 Query 93265 AC---------------------------TG---CTGATCCATTTTAAAGCCCAATCGGC 93294 || || | |||||| || |||||||| || Sbjct 13122071 ACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGC 13122012 Query 93295 TTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGA 93354 || ||||| | |||||| | ||| || || ||||| || || | || | || | || Sbjct 13122011 CTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTTTCTTTGGA 13121952 Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| | ||||| || || || | ||| ||||||||| ||||| | || ||||| || Sbjct 13121951 ATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTTTCCATGGC 13121892 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||| | |||||||| ||||| |||||||| || | ||| Sbjct 13121891 AATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCACTC 13121832 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 || || |||||||| |||| || || ||||||| | |||| || | |||| | Sbjct 13121831 CACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACATGCGAAGT 13121772 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGA 93593 |||| | ||| ||| || || ||| | | || | || || ||||| || | Sbjct 13121771 GAAATATCTCTACTCAGGCTTCAGGGCTTCCTGGTGCTGA-ATGTCCTTGGAAAGGTCCA 13121713 Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653 | || || | ||||| || || || || || || || |||| | ||| || || | | Sbjct 13121712 CCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATATCACGGT 13121653 Query 93654 ATTGAATTGGAAATATGACA 93673 ||| || ||||| |||||| Sbjct 13121652 ATTCGATAGGAAAGATGACA 13121633 >seq8888 Length=9016713 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||||| || ||||| Sbjct 1704270 GAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATG 1704329 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | |||||||| ||||| |||||||| Sbjct 1704330 GCAATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTG 1704379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556785790850240