Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5555 111 1e-19 seq920 96.9 3e-15 seq8555 93.3 4e-14 seq4999 89.7 4e-13 seq1564 89.7 4e-13 seq3672 84.2 2e-11 >seq5555 Length=11985078 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 7696493 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 7696434 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 7696433 TGACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 7696374 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| |||||| | || || ||||| Sbjct 7696373 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 7696314 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || ||||| ||||| | || | || |||| ||| | |||||| Sbjct 7696313 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGGT 7696265 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 7696949 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 7696890 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 7696889 TGACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 7696830 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| |||||| | || || ||||| Sbjct 7696829 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 7696770 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| ||||| Sbjct 7696769 CATCCAGAAAGAGTCCAC 7696752 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 7697177 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 7697118 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 7697117 TGACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 7697058 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| |||||| | || || ||||| Sbjct 7697057 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 7696998 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| ||||| Sbjct 7696997 CATCCAGAAAGAGTCCAC 7696980 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 7697405 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 7697346 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 7697345 TGACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 7697286 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| |||||| | || || ||||| Sbjct 7697285 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 7697226 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| ||||| Sbjct 7697225 CATCCAGAAAGAGTCCAC 7697208 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 7697633 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 7697574 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 7697573 TGACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 7697514 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| |||||| | || || ||||| Sbjct 7697513 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 7697454 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| ||||| Sbjct 7697453 CATCCAGAAAGAGTCCAC 7697436 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 7697861 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 7697802 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 7697801 TGACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 7697742 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| |||||| | || || ||||| Sbjct 7697741 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 7697682 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| ||||| Sbjct 7697681 CATCCAGAAAGAGTCCAC 7697664 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 7698089 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 7698030 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 7698029 TGACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 7697970 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| |||||| | || || ||||| Sbjct 7697969 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 7697910 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| ||||| Sbjct 7697909 CATCCAGAAAGAGTCCAC 7697892 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| | || ||||| ||| Sbjct 7696721 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCTTGGAGGTGGAGCCCAG 7696662 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 7696661 TGACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 7696602 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| |||||| | || || ||||| Sbjct 7696601 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 7696542 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| ||||| Sbjct 7696541 CATCCAGAAAGAGTCCAC 7696524 >seq920 Length=9572204 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || || | || || || || |||||||||| || ||| || Sbjct 2426626 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCC 2426567 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| | | || || | || || || || |||||||| || ||||| || || Sbjct 2426566 TCAGATGCAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 2426507 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| ||||| || | || ||| || || | || || ||| Sbjct 2426506 CAGCAAAGACTGATCTTTGCAGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 2426447 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||||| | ||| | || ||| || | || || ||| Sbjct 2426446 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 2426396 >seq8555 Length=10321147 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 22225 ATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACC 22284 ||||| || || || | || || || || ||||||| || || ||| || | ||||| Sbjct 2781026 ATTTTCGTGAAGACCGTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGATACA 2780967 Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 | || || | || || || || |||||||| || ||||| || || || ||| | Sbjct 2780966 ATAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAAAGA 2780907 Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 || || |||||||| || || |||| ||| || || | || || |||||||||||| Sbjct 2780906 CTGATCTTTGCCGGAAAGCAACTAGAAGATGGACGTACTTTGTCTGACTACAACATTCAA 2780847 Query 22405 AAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| | ||| | || ||| || | || || || Sbjct 2780846 AAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 2780806 >seq4999 Length=12770656 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || | ||| || || | || || || || ||| ||||| ||||| |||| Sbjct 4874909 AGATGCAGATCTGTGTGAAGACCCTGACAGGCAAGACCACCACCCTTGAGGTGGAGACCA 4874968 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || || | | || |||| ||||| ||||||||||||||||| | || || | Sbjct 4874969 GTGACTCCATAAAGAATGTCAAGGCCAAAATCCAAGACAAGGAGGGTATCCTGCCTGACC 4875028 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| || ||| |||||||||| || ||| | || |||| || ||| Sbjct 4875029 AGCAGCATCTGATTTTTATGGGCAAACAGTGGGAAGATGGTAGAAC--TCTCAGACAACA 4875086 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| || ||||| |||||| |||| || || Sbjct 4875087 ACATCCAGAAAGAGTCCACCCTACACTTGGT 4875117 >seq1564 Length=3672159 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| || || || || || || ||||| || || |||| || || ||||| Sbjct 1054878 GTCAAGATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAG 1054819 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || || || ||||| || || || || Sbjct 1054818 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCT 1054759 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||||||| | || ||| |||||| | || ||| Sbjct 1054758 GACCAGCAGAGGCTCATCTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGAT 1054699 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || || || || ||| Sbjct 1054698 TACAACATCCAGAAGGAGTCGACC 1054675 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 1054188 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1054129 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||| || || || || || || Sbjct 1054128 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAG 1054069 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||||||| | || ||| |||||| | || ||||||||| Sbjct 1054068 CAGAGGCTCATCTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1054009 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 1054008 ATCCAGAAAGAGTCGACC 1053991 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 1054416 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1054357 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||| || || || || || || Sbjct 1054356 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAG 1054297 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||||||| | || ||| |||||| | || ||||||||| Sbjct 1054296 CAGAGGCTCATCTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1054237 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 1054236 ATCCAGAAAGAGTCGACC 1054219 >seq3672 Length=15443579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || || | || || || || ||||||| || || ||| || Sbjct 13644338 AATATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCC 13644397 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || | | || || || || |||||||| || ||||| || || Sbjct 13644398 TCGGATACAATAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 13644457 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| || || || | || ||| || || | || || ||| Sbjct 13644458 CAGCAAAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 13644517 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || | ||| | ||| | || ||| || | || || ||| Sbjct 13644518 AACATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 13644568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419672876072440