Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3672 118 9e-22 seq920 114 1e-20 seq8555 105 6e-18 seq1564 95.1 1e-14 seq4777 93.3 4e-14 seq5888 91.5 1e-13 seq4888 91.5 1e-13 seq9777 86.0 5e-12 seq2941 82.4 6e-11 >seq3672 Length=15443579 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || | || |||||||||||||| || Sbjct 13644568 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGA 13644509 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || ||||| ||||| Sbjct 13644508 CAAAGTACGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 13644449 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| |||| | ||| | || || | || |||||| Sbjct 13644448 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGAC 13644389 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || || ||||||||||| Sbjct 13644388 CTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 13644341 >seq920 Length=9572204 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || |||||||||||||| || Sbjct 2426396 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2426455 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || || || |||| || | || ||||| ||||| Sbjct 2426456 CAAAGTACGTCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGG 2426515 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| |||| | ||| | | || | || |||||| Sbjct 2426516 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTCGAC 2426575 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || || ||||||||||| Sbjct 2426576 CTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 2426623 >seq8555 Length=10321147 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||||||| || | ||| | || || || |||||||||||||| || | Sbjct 2780806 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2780865 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| ||||| || || || |||| || | || ||||| |||||| Sbjct 2780866 AAAGTACGTCCATCTTCTAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 2780925 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| ||||| ||||| |||| | ||| | || || | || |||||| Sbjct 2780926 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACC 2780985 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 114378 || | || | || || || |||| || || || ||||||| Sbjct 2780986 TCGAGAGTGATGGTCTTCCCCGTCACGGTCTTCACGAAAATCT 2781028 >seq1564 Length=3672159 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || ||||| || Sbjct 1053992 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCC 1054051 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || |||||||| || || ||||| || Sbjct 1054052 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 1054111 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 1054112 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1054171 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1054172 TTCACGAAGATCTGCAT 1054188 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || ||||| || Sbjct 1054220 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCC 1054279 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || |||||||| || || ||||| || Sbjct 1054280 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 1054339 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 1054340 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1054399 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1054400 TTCACGAAGATCTGCAT 1054416 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| | ||| || |||||| || ||||| || Sbjct 1054448 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCC 1054507 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || |||||||| || || ||||| || Sbjct 1054508 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 1054567 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 1054568 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1054627 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1054628 TTCACGAAGATCTGCAT 1054644 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| | ||| || |||||| || ||||| || Sbjct 1054676 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCC 1054735 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || |||||||| || || ||||| || Sbjct 1054736 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 1054795 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || |||||||||| || Sbjct 1054796 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 1054855 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1054856 TTCACGAAGATCTGCAT 1054872 >seq4777 Length=16179633 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 || ||| || | |||||||| || | ||| | | || || ||||||| |||||| || Sbjct 14702137 AACACCATCATGAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTC 14702078 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 || | |||| |||||| ||||| || || || |||| || | || ||||| || Sbjct 14702077 AGACAAAATACGTCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGG 14702018 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||| ||||| ||||| ||||| |||| | ||| | | || | || ||| Sbjct 14702017 AGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTC 14701958 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | || | || || || ||||| || || || ||||||||||| Sbjct 14701957 GACCTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 14701907 >seq5888 Length=21378709 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | ||||||| || | ||| | ||||| || |||||||||||||| || Sbjct 13335861 ACCACCATGAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 13335920 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || || ||||| ||||| Sbjct 13335921 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAGG 13335980 Query 114275 AATGCCTTCTTTGTC 114289 ||| ||||| ||||| Sbjct 13335981 AATTCCTTCCTTGTC 13335995 >seq4888 Length=12843668 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||||||| || | ||| | || || || |||||| |||||| || || |||||| Sbjct 850549 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGACAAAGTACGT 850490 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||||| ||||| || ||||| |||| || | || ||||| |||||||| ||||| Sbjct 850489 CCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 850430 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 || ||| ||||| |||| | ||| || || || |||||| || | || Sbjct 850429 TTATCGTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCGACCTCGAGAGTG 850370 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || ||||| || || || ||||||||||| Sbjct 850369 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 850332 >seq9777 Length=8339292 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| || ||||||||||| ||| | |||||| || ||||| || Sbjct 5690815 GTAGACTCTTTCTGGATGTTGTAATCAGAAGGAGTGTGGCCATCTTCCAGCTGTTTGCCT 5690874 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||||||||| || ||||| || Sbjct 5690875 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 5690934 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||| |||| || Sbjct 5690935 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 5690994 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 5690995 TTCACGAAGATCTGCAT 5691011 >seq2941 Length=1025224 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | ||||||| || | ||| | || || || |||||||||||||| || Sbjct 785947 ACCACCATGAAGTCTCACTACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 785888 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || ||||| || | Sbjct 785887 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGA 785828 Query 114275 AATGCCTTCTTTGTC 114289 ||| ||||| ||||| Sbjct 785827 AATTCCTTCCTTGTC 785813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420079222698912