Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7110 120 6e-22 seq1386 111 3e-19 seq8888 84.2 4e-11 >seq7110 Length=16720443 Score = 120 bits (132), Expect = 6e-22 Identities = 292/439 (67%), Gaps = 5/439 (1%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || || |||||||| || || | || || || || |||||| Sbjct 13122108 GTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 13122167 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | ||||||||| ||||| || || || ||||| || ||||| || Sbjct 13122168 CTCAAGAAACGAGGACT-GATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 13122226 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 |||||| | || | |||||||||||||| ||||| | ||||| ||||| || Sbjct 13122227 CGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTC---AAACACCTGCTACACAAACC 13122283 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946 ||| || || | ||| || ||| | || || ||| || |||||||||| Sbjct 13122284 TTCGGAGCAGAGAGTCAAATAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCT 13122343 Query 42947 CACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 |||| || | ||| | ||| || | || ||||| | | ||| ||||||| Sbjct 13122344 CACGGAGGCCCTGACAGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACAT 13122403 Query 43007 CCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCC 43066 | | | ||| || ||| || || | || ||||| | ||| | | || Sbjct 13122404 CGAATTCGTGGCAGACAGACTTATGCGGGAGCTGGGTTTTAGCAAGGTTTTCAGAGTAGA 13122463 Query 43067 GTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAA 43126 || || |||||||||||||| || || |||| || ||||| ||||| | ||||| Sbjct 13122464 AAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGAGAA 13122523 Query 43127 GCGCGTCGCCGACTACCAG 43145 | | || | ||| || ||| Sbjct 13122524 GAGAGTAGGCGAGTATCAG 13122542 >seq1386 Length=4420875 Score = 111 bits (122), Expect = 3e-19 Identities = 182/259 (70%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || || |||||||| || || | || || || || |||||| Sbjct 837656 GTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 837597 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 ||||| | |||| | ||||||||| ||||| || || || ||||| || ||||| || Sbjct 837596 CTCAAAAAACGAGGTCT-GATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 837538 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 |||||| | || | |||||||||||||| ||||| | ||||| ||||| || Sbjct 837537 CGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTC---AAACACCTGCTACACAAACC 837481 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946 ||| || || | ||| || ||| | || || || || |||||||||| Sbjct 837480 TTCGGAGCAGAGAGTCAAATAAATAATCGTCAATGCAGTTAGAATAGAACAGGAGTTCCT 837421 Query 42947 CACGCAGTCGCTGCCCGTG 42965 |||| || | ||||| ||| Sbjct 837420 CACGGAGGCCCTGCCAGTG 837402 >seq8888 Length=9016713 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || || |||||||| || || | || || || || |||||| Sbjct 1702399 GTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 1702340 Query 42768 CTC-AAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 ||| || | |||| | ||||||||| ||||| || || || ||||| || ||||| || Sbjct 1702339 CTCAAAAAACGAGGTCT-GATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 1702281 Query 42827 CGAGG 42831 ||||| Sbjct 1702280 CGAGG 1702276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944211997509760