Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq780 203 3e-47 seq2230 100 3e-16 seq6777 89.7 5e-13 >seq780 Length=6765806 Score = 203 bits (224), Expect = 3e-47 Identities = 425/631 (67%), Gaps = 7/631 (1%) Strand=Plus/Minus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||| ||||| ||||||||||| ||||| | ||| || || || | || || || || || Sbjct 32426 GTAAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGACGTG 32367 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 || | ||| || |||| |||||||| ||||| || || || |||| ||||| Sbjct 32366 TGCGATCATGTAGC-----AGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCAT 32312 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACA 20370 |||||| ||| |||| |||||||| ||||| |||||||| | | || || || || || Sbjct 32311 GTCTCCTGACATCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACGTAGAACTGGCA 32252 Query 20371 TAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACAT 20430 | ||| || || || || ||||| | | | || || ||||| ||||||| Sbjct 32251 AAGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAG 32192 Query 20431 AATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATC-CACAATGTACGACAATTGGT 20489 ||||||||||| |||| || || |||| ||| || || | | | || ||| | Sbjct 32191 GATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTG-CAGTTGAT 32133 Query 20490 CAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCC 20549 | | || || ||| ||| || | |||| || ||| | |||||||| ||||||| Sbjct 32132 CTACTCCTTGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCC 32073 Query 20550 ACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGG 20609 |||| || || ||||| || || |||||||| || |||| | | || | | | Sbjct 32072 ACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGT 32013 Query 20610 CCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCC 20669 ||| ||| || | ||| ||||| ||||| || || ||||| | || |||||| Sbjct 32012 CCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCT 31953 Query 20670 TGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACA 20729 | | || || ||||| | |||||| |||| ||| | | || || || || | Sbjct 31952 TAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAA 31893 Query 20730 CCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAA 20789 | || || || || || | ||||| | || | ||| || || | ||||||||||| | Sbjct 31892 CACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGA 31833 Query 20790 ATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 | | || |||||||| |||| |||||||| Sbjct 31832 ACACCGACAGGGTGCCGGTGCCTGTGCGGTC 31802 >seq2230 Length=20112346 Score = 100 bits (110), Expect = 3e-16 Identities = 117/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||| ||||| ||||||||||| ||||| | | | || || || | || || || | || Sbjct 11223172 GTAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 11223231 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 || | ||| || || | |||| ||||||||| | ||| || | || |||| ||| | Sbjct 11223232 TGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCT 11223291 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCA 20347 |||||| |||||||| |||||||| ||||| |||||| Sbjct 11223292 GTCTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCA 11223327 >seq6777 Length=13026147 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||| ||||| || || || |||| ||| Sbjct 785379 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 785320 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 |||||||| |||||||| ||||||| ||||| |||||||||| | || || || || Sbjct 785319 ATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 785260 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || | ||| || || || || ||||| Sbjct 785259 CAAAGGGCGTGGCACGGGGGTAGGGCCAT 785231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441313347083840