Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3672 145 2e-29 seq4888 127 5e-24 seq1564 123 6e-23 seq9777 118 3e-21 seq2575 114 3e-20 seq7443 102 2e-16 seq4225 100 7e-16 seq1530 91.5 3e-13 >seq3672 Length=15443579 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 13644567 CCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGAC 13644508 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| ||||| || |||||||| | |||| | || | Sbjct 13644507 AAAGTACGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 13644451 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || |||||||| || || || ||||||||||| | ||| | ||| Sbjct 13644450 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCG 13644391 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 13644390 ACCTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 13644341 >seq4888 Length=12843668 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||| | ||||| | || ||||||| ||| || ||||| | || | ||| | Sbjct 850558 CCACCGTGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTGGTCAGAC 850499 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||||||||| | ||| || || || |||||||| | |||| | || | Sbjct 850498 AAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 850442 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||| ||||| || || || || |||||| | | ||| | ||| Sbjct 850441 GGAATTCCTTCCTTATCGTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCG 850382 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 850381 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 850332 >seq1564 Length=3672159 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | ||||| || || ||| Sbjct 1053998 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAG 1054057 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || |||||||| Sbjct 1054058 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1054117 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 1054118 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1054177 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1054178 AAGATCTGCAT 1054188 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | ||||| || || ||| Sbjct 1054226 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAG 1054285 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || |||||||| Sbjct 1054286 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1054345 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 1054346 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1054405 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1054406 AAGATCTGCAT 1054416 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || ||||| || ||||| | ||||| || || ||| Sbjct 1054454 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAG 1054513 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || |||||||| Sbjct 1054514 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1054573 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 1054574 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1054633 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1054634 AAGATCTGCAT 1054644 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || ||||| || ||||| | ||||| || || ||| Sbjct 1054682 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAG 1054741 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || |||||||| Sbjct 1054742 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1054801 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| ||||||| ||||| ||| Sbjct 1054802 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACG 1054861 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1054862 AAGATCTGCAT 1054872 >seq9777 Length=8339292 Score = 118 bits (130), Expect = 3e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | | ||| | || ||||| | ||||| ||||| ||| Sbjct 5690821 TCTTTCTGGATGTTGTAATCAGAAGGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAG 5690880 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||||||||||||||| || || |||||||| Sbjct 5690881 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 5690940 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || |||| ||||| ||| Sbjct 5690941 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACG 5691000 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 5691001 AAGATCTGCATTTTG 5691015 >seq2575 Length=1273154 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || |||| || ||||| | ||||| ||||| ||| Sbjct 238730 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAG 238671 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | ||| | | ||||| ||||| ||||||||||| || || ||||| || Sbjct 238670 ATAAACCTCTGCTAGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 238611 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 238610 TCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 238551 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 238550 AAGATCTGCAT 238540 >seq7443 Length=30544692 Score = 102 bits (112), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | | ||||| |||||||| | ||||| ||||| ||| Sbjct 5029130 TCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCTTCCAGCTGTTTGCCTGCAAAG 5029071 Query 288343 ATCAGACGCTGTTGA--GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 || || | ||| || | ||||| ||||| ||||||||||| || || ||||| | Sbjct 5029070 ATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACAT 5029011 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | | || | || || | || || || || ||||| ||||| || ||||| ||||| Sbjct 5029010 TCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCC 5028951 Query 288461 CGAATATCTGCAT 288473 |||| |||||||| Sbjct 5028950 CGAAGATCTGCAT 5028938 >seq4225 Length=13699901 Score = 100 bits (110), Expect = 7e-16 Identities = 140/194 (72%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | || | || || || | ||| || || || ||| Sbjct 3551511 TCCTTTTGAATGTTGTAGTCAGATGAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAAG 3551452 Query 288343 ATCAGAC---GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | |||| | || | ||||||||||||||||||||||| || || || || Sbjct 3551451 ATCAGTCTTTGCTGGTTAGGA---GGGATTCCTTCTTTATCCTGGATCTTGGCCTTTACA 3551395 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 |||||||| | ||| | ||| || | ||| ||||| ||||| || ||||| ||||| Sbjct 3551394 TTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTCAGGGTCTTC 3551336 Query 288460 ACGAATATCTGCAT 288473 | ||| |||||||| Sbjct 3551335 ATGAAAATCTGCAT 3551322 >seq1530 Length=3741024 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | ||||| ||||| ||| Sbjct 840981 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGTTTGCCTGCAAAG 841040 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG-TT 288401 | || | ||| || | ||||| ||||||||||||||||| || || | || | Sbjct 841041 AGGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCATCCAGGACA 841100 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 |||| | || || | || || || || ||||| ||||| | |||||| ||||| | Sbjct 841101 TTCT-CGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCAGGTCAGGGTCTTCAT 841159 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 841160 GAAGATCTGCAT 841171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179491528066128