Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3672 91.5 1e-13 seq8555 86.0 6e-12 seq920 84.2 2e-11 >seq3672 Length=15443579 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 138422 ACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAAT 138481 |||||||||||||||||||||| || |||||| || || ||||| || || | | Sbjct 13644533 ACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTTCCAGCAA 13644474 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATT 138541 |||| || | || ||||| ||||| || ||||| ||||| ||| || |||| | Sbjct 13644473 AGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGT 13644414 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 ||| | || || | | || ||||||| || | || || || ||||| || || | Sbjct 13644413 TTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCA 13644354 Query 138602 CAAAAATCTGCAT 138614 | ||||||||||| Sbjct 13644353 CGAAAATCTGCAT 13644341 >seq8555 Length=10321147 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| || || ||||| || |||| | Sbjct 2780839 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCTAGTTGCTTTCCGGCA 2780898 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || ||||| ||||| || ||||| ||||| ||| || |||| Sbjct 2780899 AAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACA 2780958 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | || ||||||| || | || || || |||| || || Sbjct 2780959 TTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCCGTCACGGTCTTC 2781018 Query 138601 ACAAAAATCT 138610 || ||||||| Sbjct 2781019 ACGAAAATCT 2781028 >seq920 Length=9572204 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| || || ||||| || || | | Sbjct 2426430 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCTGCA 2426489 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || ||||| ||||| || ||||| ||||| ||| || |||| Sbjct 2426490 AAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACA 2426549 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | | || | | || ||||| | || | || || || ||||| || || Sbjct 2426550 TTTTCTATTGCATCTGAGGGTTCGACCTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTC 2426609 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 2426610 ACGAAAATCTGCAT 2426623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496195553454720