Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq953 170 3e-37 seq9891 159 5e-34 seq2008 104 3e-17 >seq953 Length=6702869 Score = 170 bits (188), Expect = 3e-37 Identities = 172/224 (77%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || ||||||| |||||| || ||||||| || || || ||||| || ||||| || || Sbjct 2030646 GTCTGAAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 2030705 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||| ||||| | |||||| || |||||||||||||| | ||| ||||||| |||||| Sbjct 2030706 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 2030765 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 ||||| | |||||| ||||| ||||| | || || || | || | || | ||| | Sbjct 2030766 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 2030825 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| ||||| |||||||| || || |||| Sbjct 2030826 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAAT 2030869 Score = 154 bits (170), Expect = 2e-32 Identities = 217/302 (72%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| | || || ||||| || ||||| || || ||||| |||||||| | Sbjct 2028980 AACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTGA 2029039 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || | | ||| | |||||||| || || || || ||||| || ||||||||| | Sbjct 2029040 GGCAGTGGTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACTC 2029099 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || || || || |||| || ||||||||||| || || ||||| | || | Sbjct 2029100 AGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCCCCAACTTCTAC 2029159 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGA 9113 ||| |||| || |||||||| | || || |||||||| || | |||| ||| ||| | Sbjct 2029160 CATGGTCTCCCCAAAGATGGCGTCCGGTCGAGGTTTTTCTACCA-GAAGAGCAGGGTACA 2029218 Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173 | || | || || | ||| |||||||| ||||| ||||| ||||| || |||||||| | Sbjct 2029219 GCTCCATGGCGTCAATGTCACCATAGAGCGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 2029278 Query 9174 CT 9175 || Sbjct 2029279 CT 2029280 Score = 107 bits (118), Expect = 3e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| | | ||| || |||||||| ||||||||| ||| ||| | || Sbjct 2031684 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 2031743 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || |||||||||||||| Sbjct 2031744 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 2031803 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || ||||| ||||||| | | ||||||| || || Sbjct 2031804 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAG 2031860 Score = 86.0 bits (94), Expect = 9e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| ||| || ||||| ||| ||| || Sbjct 2032291 TCACCTTTCACACCCATGGGCGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 2032350 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGC 10486 |||||||| || || ||||| ||||||||||| || |||| Sbjct 2032351 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGC 2032390 >seq9891 Length=223 Score = 159 bits (176), Expect = 5e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 9745 AACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTG 9804 |||| |||||| || ||||||| || || || ||||| || ||||| || || ||||| Sbjct 223 AACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACTCTGTTA 164 Query 9805 TGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCA 9864 ||||| | |||||| || |||||||||||||| | ||| ||||| | |||||| ||||| Sbjct 163 TGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAGACTTCC 104 Query 9865 TTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGG 9924 | |||||| ||||| ||||| | || || || | || | || | ||| | ||||| Sbjct 103 TGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCGACCTGA 44 Query 9925 GTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || |||||||| ||||| |||||||| || || |||| Sbjct 43 GTATCTTTGACTGTGGGAGGATACATCTCGCCACCAAT 6 >seq2008 Length=20308448 Score = 104 bits (114), Expect = 3e-17 Identities = 174/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || | || ||||| | || ||||| || ||||| | ||||||||| Sbjct 2729887 GTGGCCGTCTTGACAAGGTTGAAACCCATCTCACCGCCAAATGTGCTCGACTTCCAGTAC 2729946 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || ||||| ||| | | ||| || || | |||||| |||||||| | || Sbjct 2729947 TCTGGAGAACAGATAGGATTCCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCT 2730006 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | ||| Sbjct 2730007 ATCATACTCTCCCCAAAGATGGAGTTTGGAGGGCACTTCTCAA-GAAGCAGCCCTGGGTA 2730065 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| ||| ||||| || | |||||||| || || ||||||||||| Sbjct 2730066 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 2730125 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 2730126 TCCTACAAG 2730134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723630513838400