Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2164 96.9 4e-15 seq2119 93.3 5e-14 seq909 93.3 5e-14 seq5999 87.8 2e-12 >seq2164 Length=1979221 Score = 96.9 bits (106), Expect = 4e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 418249 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCCCGGGTTCGATCCCCGTA 418308 Query 136777 GGG 136779 ||| Sbjct 418309 GGG 418311 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 389950 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 389892 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 453594 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 453536 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 455404 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 455462 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 466549 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 466491 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 468312 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 468370 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 708373 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 708431 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 189147 TAGCTCAGTCGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 189205 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| |||||| || |||||| Sbjct 407559 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTTGATCCCCGT 407501 >seq2119 Length=20250593 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 12705033 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 12704975 >seq909 Length=8853351 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 1607736 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 1607794 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 1632835 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 1632777 >seq5999 Length=11637418 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/279 (67%), Gaps = 14/279 (5%) Strand=Plus/Plus Query 158462 CTCTACCCCCAGGATGTTATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACT 158521 |||| || | || || |||||| | || || || ||||| || ||||||| || |||| Sbjct 8324729 CTCTTCCTTCTGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACT 8324788 Query 158522 GTATCAACGTTGGTGCGGGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTC 158581 || | || || || || |||| ||| ||||||| ||| | | || || | Sbjct 8324789 TCATAGATGTAGGAGCTGGTGTCACAGATGAAGATTATAGAGGAAATGGTTGTGTTGTAC 8324848 Query 158582 TCTTCAATCATGG---AGACAAGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGC 158638 | || ||| ||| ||| ||| ||||| || || ||||||||||| || ||||||| Sbjct 8324849 TGTTTAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAGC 8324905 Query 158639 TTGTTCTAGAACGTTGTGAGACGCCACCC----ATTGAGGAAATTAACATCGTCGAAGAT 158694 | || ||||| || | ||||| || |||||| || | | | || || Sbjct 8324906 TCATTTGTGAACG----GATATTTCACCCAGAAATAGAGGAAGTTCAAGTTTTAGATGAC 8324961 Query 158695 ACGGAGAGGGGTTCGGGTGGATTTGGTTCTACTGGCAAT 158733 || || |||||||| || || |||||||| ||||| ||| Sbjct 8324962 ACTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAAAT 8325000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588896664932800