Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1386 322 5e-83 seq7110 311 1e-79 seq8888 123 3e-23 seq1453 120 3e-22 seq1508 107 2e-18 >seq1386 Length=4420875 Score = 322 bits (356), Expect = 5e-83 Identities = 568/827 (69%), Gaps = 43/827 (5%) Strand=Plus/Plus Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || |||| || || ||||||| | |||||||| || || | Sbjct 837340 AGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGC 837399 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAAT 18908 || || || || || || || || || || |||||||| | ||||| | ||| || || Sbjct 837400 TTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATTCTAACTGCAT-TGACGATTAT 837458 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 || ||||| | || ||| || ||| || ||||| ||||||| || ||||| Sbjct 837459 TTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAA 837518 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||| |||| ||||||||||| || || | |||||| |||||||| | || ||||| Sbjct 837519 GTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCAT 837578 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 ||| |||| |||||| | ||||||||| || ||||| || ||||||||||| || ||||| Sbjct 837579 CAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 837638 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT-------AGCAT--CATTA--TT- 19136 ||||| ||||| || || | | |||||||| || | || ||||| || Sbjct 837639 CACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTG 837698 Query 19137 --------------ATGA-------------ATCCATTTCAGTGCCCAATCAGCCTTCTT 19169 ||| ||||| || |||||||| |||||||| Sbjct 837699 GAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTT 837758 Query 19170 TTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTT 19229 |||||||| ||||||||||| |||| || || ||| | | || | | |||||| Sbjct 837759 CTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTT 837818 Query 19230 AACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTG 19289 || || | || || | | ||| |||||||| ||||| || ||||| || || || | Sbjct 837819 AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAG 837878 Query 19290 AAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAA 19349 || || || ||||| | ||||| || ||||| ||||| | ||| | ||||| Sbjct 837879 GAAGCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTAAACCAA 837938 Query 19350 ATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATG 19409 |||||||| ||||| |||||||| |||||||| || || | ||||| ||| |||| Sbjct 837939 GTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGCAAAATGAAATA 837998 Query 19410 TTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCTTTAGATAAATCTACTTCTT 19468 | | || || | | || | | || ||| | | ||| || || || | || || |||| Sbjct 837999 TCTCTCCTCAG-GCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTT 838057 Query 19469 CAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTA 19528 || |||||||||| |||||||| ||||| |||||||| | ||| |||||| | |||| | Sbjct 838058 CAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGA 838117 Query 19529 TAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTCC 19575 ||||||| || ||||| | | |||||||| |||| |||||| Sbjct 838118 TAGGAAAGATGACAAAGCGGCGGGTGTTTTCTTTCAGAAGTGGTTCC 838164 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || ||| |||||||| Sbjct 837084 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGA---CATCACTCCCAT 837140 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 837141 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 837200 Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755 ||||| || ||||||||||||| ||| Sbjct 837201 CTCCATGAAGTCAAATGGATTTTCTAC 837227 >seq7110 Length=16720443 Score = 311 bits (344), Expect = 1e-79 Identities = 656/975 (67%), Gaps = 49/975 (5%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || ||| |||||||| Sbjct 13122602 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGA---CATCACTCCCAT 13122546 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || ||| |||| ||||| || || || | ||| ||| Sbjct 13122545 CCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 13122486 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||||| ||||||||||||| ||| | | | || | || || | || | Sbjct 13122485 CTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCCGCAT 13122426 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||| || || || |||| || || ||||||| | |||||||| || || | Sbjct 13122425 AAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAG 13122366 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAA 18907 || || | || || || || || || || |||||||| | ||||| | ||| || | Sbjct 13122365 CTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT-TGACGATTA 13122307 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | || ||||| | || ||| || ||| || ||||| ||||||| || |||| Sbjct 13122306 TTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAA 13122247 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||||| |||| ||||||||||| || || | |||||| |||||||| | || |||| Sbjct 13122246 AGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCA 13122187 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||||||||| ||| || | ||||||||| || ||||| || ||||||||||| || |||| Sbjct 13122186 TCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTT 13122127 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAAC-TAGCA--------TCATTA--TT 19136 | ||||| ||||| || || | | |||||||| || | | | ||||| || Sbjct 13122126 CCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTT 13122067 Query 19137 --------ATG--------------------AATCCATTTCAGTGCCCAATCAGCCTTCT 19168 ||| ||||| || |||||||| ||||||| Sbjct 13122066 GGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCT 13122007 Query 19169 TTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTT 19228 | |||||||| ||||||||||| || | || || ||| | | || | | ||||| Sbjct 13122006 TCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTT 13121947 Query 19229 TAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCT 19288 || || | || || | | ||| |||||||| ||||| || ||||| || || || | Sbjct 13121946 GAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTTTCCATGGCAATTT 13121887 Query 19289 GAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCA 19348 | || || || ||| | ||||| || ||||| ||||| | || | || |||| Sbjct 13121886 GGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCACTCCACCA 13121827 Query 19349 AATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT 19408 |||||||| |||| || ||||| |||||| | || | | ||||| | | |||| Sbjct 13121826 GGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACATGCGAAGTGAAAT 13121767 Query 19409 GTTTTTCATCTGAGGTTAATGTATTCC-AATCATTAATATCTTTAGATAAATCTACTTCT 19467 | | | || | | || | | |||| | | ||| || || || | || || || Sbjct 13121766 ATCTCTACTCAG-GCTTCAGGGCTTCCTGGTGCTGAATGTCCTTGGAAAGGTCCACCTCC 13121708 Query 19468 TCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGT 19527 ||| | ||||| || |||||||| || || ||| |||| | ||| |||||||| |||| Sbjct 13121707 TCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATATCACGGTATTCG 13121648 Query 19528 ATAGGAAATATAACA 19542 |||||||| || ||| Sbjct 13121647 ATAGGAAAGATGACA 13121633 >seq8888 Length=9016713 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| |||||||| | || |||||||| |||| ||||| Sbjct 1702276 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 1702335 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 1702336 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 1702395 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 1702396 CTACGACACGTTCTCC 1702411 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || ||| |||||||| Sbjct 1700516 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGA---CATCACTCCCAT 1700572 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 1700573 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 1700632 Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755 ||||| || ||||||||||||| ||| Sbjct 1700633 CTCCATGAAGTCAAATGGATTTTCTAC 1700659 >seq1453 Length=4135625 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| ||||||||||| ||| Sbjct 1830590 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 1830531 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 1830530 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1830471 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 1830470 ACCACCCTTTCCCC 1830457 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || |||| Sbjct 1844801 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCC 1844742 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 1844741 ATAAAATCAAAGGGATTTT 1844723 >seq1508 Length=3848527 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 149384 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 149443 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| || || ||||||||||| || |||||||| | |||| | ||| || Sbjct 149444 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 149503 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 149504 TTTCTTATACCATA 149517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/171 (72%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 147152 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 147211 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || || ||||| ||||||||| |||| | || Sbjct 147212 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCAGCTGCC--ATCTTGAGTACGGT 147269 Query 47170 TT--TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 147270 TTTCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 147320 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| ||||||| ||||| || | | || Sbjct 166917 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 166976 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 |||||||||||| ||| ||| ||||| || || || || | |||||| | ||| ||| Sbjct 166977 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATGCCCACAGATACCCTCATCAAC 167036 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| || ||||||||| Sbjct 167037 ATATGCTGTGGTCTTTCA 167054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562033083944640