Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq1297 95.1 2e-14 >seq1297 Length=8185828 Score = 95.1 bits (104), Expect = 2e-14 Identities = 164/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 197419 ACAGATATTGAGAACGTGGCTTGGAACGG--CCCTAAAATC----GCTTTAGCATTTGCC 197472 ||||| |||||| || | || |||| || ||| | || | ||||||||| ||| Sbjct 1715710 ACAGAAATTGAGCACATCGCCTGGAGTGGTCCCCAAGAAGCTTTGGCTTTAGCAGATGC- 1715652 Query 197473 AATCCTAAAGACGTTACCATAATGGATAAAAGCTACCAGGGTCGTGTCAACATTAGCCAA 197532 || ||||| ||| | | || || |||||||||||||| || | ||||| | ||| Sbjct 1715651 AAGAGGAAAGA--TTATCTTTATAGACAAAAGCTACCAGGGGCGAATAAACATCATCCA- 1715595 Query 197533 ACCAACTACTCTTTGTGCATTAGGAACCTGACCGTGAATGATGCTGGTTCGTATAAGGCC 197592 ||| | || |||| || | || ||||| |||| ||||| || | || || ||| Sbjct 1715594 --GAACAATTCCTTGTCTATCAACAAGCTGACTCTGAAAGATGCAGGAGCCTACAAAGCC 1715537 Query 197593 CAAATTAACAAAAATAATTCCCAAGTCACCACCAAGGAGGAATTTACTCTGTCT 197646 || || ||| |||| ||||| |||||||||| | ||| |||| || |||||| Sbjct 1715536 CAGATAAACCAAAAGAATTCTGAAGTCACCACAAGTGAGAAATTCACCCTGTCT 1715483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 702094215168640