Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq1297 132 6e-26 >seq1297 Length=8185828 Score = 132 bits (146), Expect = 6e-26 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || | ||||| || |||| | ||| ||| ||| ||||| Sbjct 2037283 ACTGAGGAACTTACAAGTTGTCCCTCACACCAAATGGTCTAAAAATAGGACCTGTGAGAT 2037342 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| |||||||| ||||| ||| |||| ||||| ||||||| |||| ||| ||| || Sbjct 2037343 CCACCTGACCTGCTCTGTGGAGAATCCAAATGATAACATCTTATTCAGGTGGCAGGTCTC 2037402 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || || |||| | | || | |||||||| | |||||||||||||| || | Sbjct 2037403 AGGAAACACACTTCAAAGTGAAGCAAACCTCACTATCTCCTGGGACCCCAAGAGTTTCGA 2037462 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446 ||| ||| |||||| ||| | || || || |||| |||||| || ||| | ||||| Sbjct 2037463 TGAAGAGACCTACACCTGCGTAGCTGAGAATCCTGTCAGCAATTCATCCTTCTCTGTCTC 2037522 Query 2447 GGCCCAGA 2454 | ||||| Sbjct 2037523 TGTCCAGA 2037530 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| ||||||||||| || |||||||| |||| Sbjct 255291 GTTTCACAAATCAGCTCAACCCCATTGATTGTGAATGGGGTCCTGGGGGAGTCTATAACT 255232 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGC 1986 || ||||| | ||||| | || |||||||||| ||||||||||||| Sbjct 255231 CTTACCCTGAAGTTTCCTGTGGAAGAGAAGATCACTTCCATCACCTGGC 255183 Score = 98.7 bits (108), Expect = 1e-15 Identities = 221/327 (68%), Gaps = 15/327 (5%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || ||||||||||| ||||| |||| ||||| ||||| | |||||||| |||||| Sbjct 2031974 GTTTCACAAACCAGCTCAACCCCATTGATTGTGAACGGGGTCGTGGGGGAGTCTGTAACA 2032033 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || ||||| | | ||| || |||||||||| |||||||||||||| | | || Sbjct 2032034 CTTACCCTGAAGTCTCCTATGGAAGAGAAGATCATGTCCATCACCTGGCTTCATGATGGA 2032093 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGC-CAAGAGCCCCCAGATCCACCTAACCAA 2056 | || ||| ||| || | || || || | | | ||| || | |||| Sbjct 2032094 AAATCTATCATCTTCATAGAGCCAAATGAAGCACTAAA-----CAGGGTGACTGACCCAA 2032148 Query 2057 TCCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCT 2116 || || || ||| | || |||| ||||||||||| | || || |||||||| Sbjct 2032149 AGCGGAA-----AAATCGATTGAAGGTCACCAAGTCCTACTCCTTGCAGCTCAGCAACCT 2032203 Query 2117 AGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAAC-G 2175 ||||| |||||| || | ||||| |||| ||| || | |||| | || || | Sbjct 2032204 GACGATGGCAGACACAGGACCTTACAGCGCCCAGATAACCACACTGACCTC--TTCACTG 2032261 Query 2176 TTT-CCAGCTACACGCTGAGGATCTTC 2201 ||| ||| || |||||||||||| Sbjct 2032262 TTTACCAATTATGATCTGAGGATCTTC 2032288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629198435552960