Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1386 226 3e-54 seq7110 163 3e-35 seq8888 111 2e-19 seq1453 107 2e-18 >seq1386 Length=4420875 Score = 226 bits (250), Expect = 3e-54 Identities = 430/637 (68%), Gaps = 41/637 (6%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||| ||||| |||||||| || ||||| || || | |||||| Sbjct 837498 TTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATT 837557 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || ||||| | ||||| |||||| | ||| ||||| | ||||||||| Sbjct 837558 GGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGA 837617 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAA-GTTG 37341 ||||||||||| || ||||| ||||| ||||| ||||| | |||| || | |||| Sbjct 837618 ACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTG 837677 Query 37342 AACTATAATC------------AGAA---------ATCCAttttttt------------- 37367 | | ||| |||| || | | ||| | Sbjct 837678 GAGAACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCA 837737 Query 37368 ----GTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAA 37423 | |||||||||||| || ||||| ||||| ||||| || || |||||||| Sbjct 837738 CAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAA 837797 Query 37424 GtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTG 37483 | |||||| |||| | || ||||| ||||| || | ||||||||||||||| || Sbjct 837798 TTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATG 837857 Query 37484 AATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACAT 37542 || ||||| || || || | || ||||| ||||| | ||||| | |||| ||||| | Sbjct 837858 GATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACAGGCTTCCG-TAATCTGAACTT 837916 Query 37543 CGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAG 37602 | | |||| || | | ||||||||||| ||||| |||||||| ||||||||||||| Sbjct 837917 CTTGGCTAAACTGCTAAACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAG 837976 Query 37603 CAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATAT 37662 | ||||||| || |||| ||| || ||| | || ||| | | ||| | Sbjct 837977 CCAGAACATGCAAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGT 838036 Query 37663 CTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCG 37722 | || || | || || || ||| | |||||||| ||| || ||||||||| Sbjct 838037 CCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCT 838096 Query 37723 TCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 ||||||||||| | || || ||||| || ||||| Sbjct 838097 GCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 838133 >seq7110 Length=16720443 Score = 163 bits (180), Expect = 3e-35 Identities = 517/790 (65%), Gaps = 61/790 (8%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || | || || ||||| |||| Sbjct 13122557 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAGAGAAGTTAGTCTTCCCTT 13122499 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 | ||||| ||||| |||||||| ||||||||||| | || | | | | | ||| | Sbjct 13122498 CCAGTGAAATATTCTCCATAAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCTAAA 13122441 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCA 37046 | ||| || ||| || || || || ||||| ||||| | ||| | || || Sbjct 13122440 ACCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCA 13122381 Query 37047 TAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTAT 37105 || || ||||| || || |||| | || || ||| ||| | | || |||| | Sbjct 13122380 A--TTCATCCCAATGAGCTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTT-CTATCCT 13122324 Query 37106 TACAGCATCTTTAACTAT-ATTAACAATAACT-TCT--TCAGTTGGGGGATATTTTAAAT 37161 || |||| | || || ||| | | ||| ||| || | || | | | | Sbjct 13122323 AACTGCAT---TGACGATTATTTATT-TGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGT 13122268 Query 37162 ATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCAT 37221 ||| |||| | || ||||| ||||| |||||||| || ||||| || || | ||||| Sbjct 13122267 GTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCAT 13122208 Query 37222 TAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG 37281 | ||||| || | || ||||| | |||| ||| || | ||| ||||| | |||||||| Sbjct 13122207 TGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAG 13122148 Query 37282 ATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGT------GTAC--- 37332 | ||||||||||| || ||||| ||||| ||||| ||||| | |||| ||| Sbjct 13122147 AACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTT 13122088 Query 37333 CGA-------------AAGTTGAACTATAATCAGAAATCCAttttttt------------ 37367 || | |||| | | ||| ||| | | ||| | Sbjct 13122087 GGAGAACAATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGC 13122028 Query 37368 -----GTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAA 37422 | |||||||||||| || ||||| ||||| ||||| || || ||||||| Sbjct 13122027 ACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAA 13121968 Query 37423 AGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGT 37482 | | |||||| |||| || ||||| ||||| || | |||||||||||| || | Sbjct 13121967 ATTCCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAAT 13121908 Query 37483 GAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACA 37541 | || ||||| || || || || || ||||| ||| | ||||| | |||| ||||| Sbjct 13121907 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATAATGGGCTTCCG-TAATCTGAACT 13121849 Query 37542 TCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAA 37601 || | || || || | | ||||||||| |||| || ||||| |||||| ||||| Sbjct 13121848 TCTTGGCTAAGCCACTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAA 13121789 Query 37602 GCAAGAACAT 37611 | || |||| Sbjct 13121788 GGCAGGACAT 13121779 >seq8888 Length=9016713 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 || ||||| || || | |||||| ||||| || | || ||||| | ||||| |||||| Sbjct 1702278 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 1702337 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 1702338 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 1702397 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 1702398 ACGACACGT 1702406 >seq1453 Length=4135625 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | |||||||| | Sbjct 1830592 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 1830533 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 1830532 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1830473 Query 37318 CTAC 37321 | || Sbjct 1830472 CCAC 1830469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592237014927040