Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq780 334 6e-87 seq2230 194 1e-44 seq6777 145 6e-30 seq4113 105 5e-18 seq1064 102 7e-17 >seq780 Length=6765806 Score = 334 bits (370), Expect = 6e-87 Identities = 520/743 (70%), Gaps = 5/743 (1%) Strand=Plus/Minus Query 29710 AAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGA 29769 || || || ||||| ||||| || | ||||| || | | || || || |||| Sbjct 32539 AAGTCTTCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTCTGAGCTTGGGG 32480 Query 29770 AAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACG 29829 || || || || || | || |||||| | |||||||| || | ||||| |||||| | | Sbjct 32479 AAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCGGCTCAATGTGATTCAGGTAAATG 32420 Query 29830 TGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29889 || || ||||||| ||||| ||||| || || || | || || |||||||| || ||| Sbjct 32419 TGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGACGTGTGCGATC 32360 Query 29890 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 29949 ||||| | || | ||||||||||||||| ||||| || || || |||||||| || Sbjct 32359 ATGTA-----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCT 32305 Query 29950 GACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTG 30009 ||| ||||||| ||||| || || ||||| || | |||||| ||||| || | || | Sbjct 32304 GACATCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACGTAGAACTGGCAAAGGGCG 32245 Query 30010 TGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATG 30069 |||||||| || || |||||||| | ||||| || ||||| || |||| |||||| Sbjct 32244 TGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATT 32185 Query 30070 CGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCC 30129 | ||||| || |||||| | |||| ||| | |||||||| ||||| || || Sbjct 32184 CTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCT 32125 Query 30130 ATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAAC 30189 | || || |||| ||| || |||| || || || |||||||||||||| || Sbjct 32124 TGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAG 32065 Query 30190 CCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAG 30249 || || || || || | || || ||| | ||| ||| ||| ||||||| ||| Sbjct 32064 CCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAG 32005 Query 30250 TCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTT 30309 |||| ||| || ||||| |||||||| || || ||||| || ||||| || | |||| Sbjct 32004 TCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTT 31945 Query 30310 GTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTG 30369 ||||| || ||| |||||||||| ||||||| || |||| || || || | ||| Sbjct 31944 GTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACGTTTG 31885 Query 30370 GTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGAC 30429 || || || || ||||| | | | |||| ||| ||||| || ||||| ||| Sbjct 31884 GTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACACCGAC 31825 Query 30430 AAGACTCCCGTGCCCGTCCTGTC 30452 | | || ||||| || | ||| Sbjct 31824 AGGGTGCCGGTGCCTGTGCGGTC 31802 >seq2230 Length=20112346 Score = 194 bits (214), Expect = 1e-44 Identities = 392/577 (68%), Gaps = 11/577 (2%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||||| || || || | || ||||| | |||||| | || | ||||||||||| Sbjct 11223115 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 11223173 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | ||| || ||||||| ||||| ||| | || || || | || || |||| ||| | Sbjct 11223174 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 11223233 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | |||||||| ||||| || | |||||||||| ||| |||| || || || ||| ||| Sbjct 11223234 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 11223293 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 | || ||||||||||| ||||| || || ||||| || |||||| || || || | Sbjct 11223294 CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAAA 11223352 Query 30005 TGGTGTGGCACGGAGGAAG-------AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 30057 || |||||| | || || | ||||| | ||||| | ||||| || Sbjct 11223353 GGGCATGGCACAGGGGCAGGGTGGCAGGGTATGAGAGGAAGATCTTT-TGATTCCAAGCA 11223411 Query 30058 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGC 30117 || | ||||| | |||||||| |||||| | |||| ||| | | |||||||| Sbjct 11223412 CATAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCACCTTTTGCAGT 11223471 Query 30118 TGATCCACCCCCATCCCCGAGTA-GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATG 30176 || || || || | || || | | || || |||| || || | ||| | Sbjct 11223472 TGGTCTACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAGG 11223531 Query 30177 CCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCT 30236 ||||||||| || | || || || || | || || ||||| ||| || || Sbjct 11223532 CCTCCACTGAAAGCTATAAACTGGGCCTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAG 11223591 Query 30237 CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAG 30296 ||||||| ||||||| ||| |||| ||| |||||||| || || ||||| || || Sbjct 11223592 GCTGTCCAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAG 11223651 Query 30297 CTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30333 ||| || | |||||||| || ||| ||||||||| Sbjct 11223652 CTCCTTAGCATTTGTGGAGCCCTTGATCAACCACAGC 11223688 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 19442194 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 19442135 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || || |||||||| ||||||| ||||| || ||| Sbjct 19442134 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 19442087 >seq6777 Length=13026147 Score = 145 bits (160), Expect = 6e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 785391 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 785332 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || ||||||||| | ||||| || || ||||| |||| | Sbjct 785331 ACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACC 785272 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 ||||| ||||| || | || ||||||||| || || ||||||||| Sbjct 785271 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGG 785227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || |||||||||||||| || || || || || || | || Sbjct 782138 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 782079 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 782078 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 782019 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 782018 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 781971 >seq4113 Length=38937830 Score = 105 bits (116), Expect = 5e-18 Identities = 180/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 13965542 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 13965601 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| || || |||||||| |||||| || Sbjct 13965602 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCATGTTTTCCTACCCATAATCACCGAATT 13965661 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259 ||| || ||| |||||||| || | ||||| | | || | | | || || | Sbjct 13965662 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATTCCT 13965721 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACA 112318 || || |||| ||||| || ||||| || || ||||||||| ||||| ||| Sbjct 13965722 GAG------CGGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GACA 13965774 Query 112319 CGGCCACGATACCGTTCAG 112337 | || ||||| | ||| || Sbjct 13965775 CAGCAACGATGCAGTTTAG 13965793 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 112082 GAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCA 112141 ||||||| || || || || || || || |||| |||| || || ||||| || | Sbjct 25459110 GAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTAATGAGAACTATATTAATTCTGTCCCTTA 25459169 Query 112142 GAGGTCTATTCTTTTCGGGGATG----GAGAACCAAGTCTTTCTACCCATTATCACCACG 112197 ||||| |||||| || || ||| |||||||| || || |||||||| ||||||| Sbjct 25459170 AAGGTCGATTCTTCTCTGGAATGAATGGAGAACCAGGTTTTCCTACCCATAATCACCAAA 25459229 Query 112198 TTCTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 112231 ||||| || || |||| ||||||| || | ||||| Sbjct 25459230 TTCTGTTTACCTTCTG-CTGAAGAGGTTGTGGTCA 25459263 >seq1064 Length=6047857 Score = 102 bits (112), Expect = 7e-17 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 2122611 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 2122552 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | || || |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 2122551 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 2122492 Query 112200 CTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 112231 ||| || || |||| ||||||| || | ||||| Sbjct 2122491 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 2122460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408563935229048