Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq5999 86.0 2e-12 >seq5999 Length=11637418 Score = 86.0 bits (94), Expect = 2e-12 Identities = 189/276 (68%), Gaps = 18/276 (7%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| ||||||| | || || || || || || | | Sbjct 8324732 TTCCTTCTGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 8324791 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| | ||| ||| | ||| || || | | ||||||| | | Sbjct 8324792 TAGATGTAGGAGCTGGTGTCACAGATGAAGATTATAGAGGAAATGGTTGTGTTGTACTGT 8324851 Query 1078 TTAATTTTAGCGAT-AAGCGTTTTCATATTTCAAGA--GGTGATAGGATTGCTCAGTTAA 1134 |||||||| || | || |||| | |||| | |||||| | ||||| ||| | | Sbjct 8324852 TTAATTTTGGCAAAGAAAAGTTTGAAG---TCAAAAAGGGTGATCGAATTGCACAGCTCA 8324908 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTCC----TTAGAGGATT 1188 |||||||| || | ||| || ||| |||||| ||| ||| ||||| || Sbjct 8324909 TTTGTGAAC-GGATATTT---CACCCAG--AAATAGAGGAAGTTCAAGTTTTAGATGACA 8324962 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| || || |||| Sbjct 8324963 CTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 8324998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138663853609056