Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq9777 91.5 1e-13 seq975 84.2 2e-11 >seq9777 Length=8339292 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| ||||| || || |||||||| | ||| | |||| |||| || Sbjct 5690809 TGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAGGAGTGTGGCCATCTTCCAGCTGT 5690868 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || |||||||||||||| || || || Sbjct 5690869 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTG 5690928 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | ||||| || || |||| || ||||| || Sbjct 5690929 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 5690988 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 5690989 AAGGTCTTCACGAAGATCTGCAT 5691011 >seq975 Length=6303504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/171 (71%), Gaps = 5/171 (3%) Strand=Plus/Plus Query 101263 TAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAA 101322 || |||||| || || || ||||| || ||||| || | ||| | |||| |||| Sbjct 4298444 TAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACATCCATCTTCCAG 4298499 Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 |||||| || ||||| |||| | || || || || ||||| ||||| ||||| || || Sbjct 4298500 TTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGAT 4298559 Query 101383 TTTTTGTTTTACAATTT-CTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 || |||||| ||| || || || || | ||| ||||||||||||| Sbjct 4298560 CTTGACCTTTACATTTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAGTGA 4298610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396226355767032