Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq920 91.5 1e-13 seq897 82.4 6e-11 >seq920 Length=9572204 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||| ||||| | | | || | || Sbjct 2426411 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 2426470 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| || || || | |||| || |||||||| Sbjct 2426471 TTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 2426530 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | ||||| | || ||||| | || || || Sbjct 2426531 CTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTCGACCTCAAGAGTGATGGT 2426590 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||||| || || || ||||||||||| Sbjct 2426591 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 2426623 >seq897 Length=37111980 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/208 (70%), Gaps = 9/208 (4%) Strand=Plus/Minus Query 9053 CCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCT 9112 |||||| | | |||| ||||| || ||||||||||| | || ||||| | || | || Sbjct 4541996 CCTCTATC--TCTGGG-TAAAATATCTGTTCACAAATGAGATGTGCAATTCGATCACACT 4541940 Query 9113 TATTCACGACAAA---GTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCC 9169 | || || |||| ||| || | || ||| ||||| || | || ||||| || | Sbjct 4541939 TTTTGACTTCAAACTTTTCTTTGCCAGA---ATTAAACAGTACAATACCAACGTTTCCTC 4541883 Query 9170 TGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAG 9229 ||||||| ||||| || ||||| || || || || |||||||| || | || | |||| Sbjct 4541882 TGTAATCTTCATCTATGACACCGGCTCCTACATCTATGAAGTGTTTTGCAGCCAAACCAG 4541823 Query 9230 AGCGGGGCGCGATTCGACCGTAGCATCC 9257 | || | || | || || ||||| || Sbjct 4541822 AACGCGCAGCTACTCTCCCATAGCACCC 4541795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380887570512648