Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695.
1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq8777 150 3e-31
seq7110 127 4e-24
seq1297 127 4e-24
seq1386 113 8e-20
seq2 93.3 8e-14
>seq8777
Length=12443022
Score = 150 bits (166), Expect = 3e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||||| ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 1394311 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 1394252
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | | ||||||| ||||||||||||||| || |||| |||||| |||||
Sbjct 1394251 TCCGTGTTTTGACTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 1394192
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||
Sbjct 1394191 TTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTA 1394132
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||||||||| || |||
Sbjct 1394131 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 1394099
>seq7110
Length=16720443
Score = 127 bits (140), Expect = 4e-24
Identities = 293/437 (67%), Gaps = 7/437 (2%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||| || || || ||||| |||||| ||||||| |||||||| |||| || || |||||
Sbjct 13122542 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 13122483
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956
||| ||| || || || | | | | | | || || | | |||| || ||
Sbjct 13122482 CATAAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCTAAAACCCAGCTCCCGCATA 13122425
Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016
|| || || ||| | |||||||| | ||| | ||| ||||| || |||||
Sbjct 13122424 AGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGC 13122365
Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
||| | || |||| ||||| ||||||| |||||| || || | | | ||
Sbjct 13122364 TTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATT 13122305
Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136
| || || | ||| || ||||||| ||||||| ||| | | || |||||||
Sbjct 13122304 TATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGA---ACATCAGGCAGGCA 13122248
Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196
||||| | ||| || || ||||| | ||| || || | ||||| || ||| || |||
Sbjct 13122247 AAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGC 13122188
Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256
|| | || | | ||||||||||| || | || ||||| ||||| |||||||| ||
Sbjct 13122187 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCT 13122128
Query 48257 TCCACTGCCGCGAACGC 48273
|||||||| || || ||
Sbjct 13122127 TCCACTGCAGCAAAGGC 13122111
>seq1297
Length=8185828
Score = 127 bits (140), Expect = 4e-24
Identities = 138/183 (75%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448
|||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| || |
Sbjct 6812875 GCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGCTCGC 6812816
Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508
| || | | || || ||||||| || ||||| || | |||||| |||||| || |
Sbjct 6812815 GGAGGAGGCCGGCAGTGCTGGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACCTTGT 6812756
Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568
||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| | ||
Sbjct 6812755 CCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGCCTGT 6812696
Query 241569 TCC 241571
|||
Sbjct 6812695 TCC 6812693
>seq1386
Length=4420875
Score = 113 bits (124), Expect = 8e-20
Identities = 212/311 (68%), Gaps = 3/311 (1%)
Strand=Plus/Plus
Query 47963 TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACG 48022
|| || ||| | |||||||| | ||| | ||| ||||| || ||||| |||
Sbjct 837346 TCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTCACT 837405
Query 48023 GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTA 48082
|||| |||| ||||| ||||||| ||||| || || | | | || | ||
Sbjct 837406 GGCAGGGCCTCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATTATTTATTTG 837465
Query 48083 ACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCC 48142
|| | ||| || ||||||| ||||||| ||| | | || ||||||||||||
Sbjct 837466 ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGA---ACATCAGGCAGGCAAAGTCA 837522
Query 48143 CTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACC 48202
| ||| || || ||||| | ||| || || | ||||| || ||| || ||||| |
Sbjct 837523 CAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGA 837582
Query 48203 CCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACT 48262
|| | | |||||||||||| || | || ||||| ||||| |||||||| || ||||||
Sbjct 837583 CCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACT 837642
Query 48263 GCCGCGAACGC 48273
|| || || ||
Sbjct 837643 GCAGCAAAGGC 837653
>seq2
Length=27433829
Score = 93.3 bits (102), Expect = 8e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 8645262 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 8645203
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 8645202 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 8645143
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 8645142 ATGGGGGAC 8645134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931407322531840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |