Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7110 125 1e-23 seq1386 114 2e-20 seq1453 87.8 3e-12 >seq7110 Length=16720443 Score = 125 bits (138), Expect = 1e-23 Identities = 301/456 (66%), Gaps = 15/456 (3%) Strand=Plus/Plus Query 25872 TGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGC 25931 ||| || || | |||||||||||||| ||||| || ||||| || ||||| ||||| Sbjct 13122095 TGGAGAACGTTTCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGC 13122154 Query 25932 GGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGC 25990 | || |||||||||||| | | | |||| |||||||| || |||||||| || | Sbjct 13122155 ATCGATATTCTGGCTCAAG-AAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAAC 13122213 Query 25991 TCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACT 26050 | || ||||| ||||||||| | ||| | || |||||||||||| | | || ||| Sbjct 13122214 TTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCA---AACACC 13122270 Query 26051 TGCTCCACAAACCTTCTCAAGAGACCGTC---TACAGTATCATCAAAGAGGCTGTGGAGA 26107 |||| ||||||||||| | ||| ||| || | ||| ||| | || || || Sbjct 13122271 TGCTACACAAACCTTCGGAGCAGAGAGTCAAATAAATAATCGTCA---ATGCAGTTAGGA 13122327 Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167 | || ||||||| | | || ||||| || Sbjct 13122328 TAGAACAGGAGTTCCTCACGGAGGCCCTGACAGTGAAGCTCATTGGGATGAATTGCACTT 13122387 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGG-ACTCGCC 26226 | |||| || ||||| || | ||||| ||| || || | ||||||| | || Sbjct 13122388 TGATGAAGCAGTACATCGAATTCGTGGCAGACAGACTTATGCGGGAGCTGGGTTTTAGCA 13122447 Query 26227 AGACTCT-ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 || | | | |||| || || || ||||||||||| || || || |||||||||| Sbjct 13122448 AGGTTTTCAGAGTA--GAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAA 13122505 Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||| ||||||| ||| ||||| || ||||| ||||| Sbjct 13122506 GACTAACTTCTCTGAGAAGAGAGTAGGCGAGTATCA 13122541 >seq1386 Length=4420875 Score = 114 bits (126), Expect = 2e-20 Identities = 145/196 (74%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 25872 TGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGC 25931 ||| || || | |||||||||||||| ||||| || ||||| || ||||| ||||| Sbjct 837669 TGGAGAACGTTTCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGC 837610 Query 25932 GGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGC 25990 | || ||||||||||| | | | || | |||||||| || |||||||| || | Sbjct 837609 ATCGATATTCTGGCTCAAAAA-ACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAAC 837551 Query 25991 TCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACT 26050 | || ||||| ||||||||| | ||| | || |||||||||||| | | || ||| Sbjct 837550 TTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCA---AACACC 837494 Query 26051 TGCTCCACAAACCTTC 26066 |||| ||||||||||| Sbjct 837493 TGCTACACAAACCTTC 837478 >seq1453 Length=4135625 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/129 (78%), Gaps = 4/129 (3%) Strand=Plus/Plus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || |||| |||||||||||||| || || || || ||| || || ||||| || || | Sbjct 1830464 GGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATAT 1830523 Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAG 25997 ||||||| ||| | ||| |||| ||||| || || ||| |||||||| || |||||||| Sbjct 1830524 TCTGGCTAAAG-AAAAGAGGACTTATGCCTGGACT-TACTTTTTCCAATGAACTCATCAG 1830581 Query 25998 CAGGGACGA 26006 ||| || || Sbjct 1830582 CAGAGATGA 1830590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928719684605440