Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2674 342 6e-89 seq2563 183 4e-41 seq1120 107 2e-18 >seq2674 Length=18718125 Score = 342 bits (378), Expect = 6e-89 Identities = 673/988 (68%), Gaps = 17/988 (2%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| |||||| || || || Sbjct 13378606 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGTGTCGAACTTGTTGGC 13378547 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||||| ||||| || | | ||||||| || ||| || | ||||| ||||| || Sbjct 13378546 GAACAAGTGGTGCACGCGC---AACATCCAGTTCAAGTCACCCGCTCCGAAAACGCACAC 13378490 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| |||||| | || |||||||| | || || || | | ||||||||| Sbjct 13378489 AGAGCGCACGTGGACGCCGCTACACGGCGGGTAGGGGGCGCCCTTGGAAATGTCACCTTC 13378430 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| || | Sbjct 13378429 AAAGTACTGCCACTTGACAAACCTGGCAATCGCGTGCATGTCGGACATGTCGTACTTATG 13378370 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | | || || || |||| || | ||| | |||||||| || | || Sbjct 13378369 GCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 13378310 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA-TTAACCTGTCCCGCA 160410 ||| |||||||| ||||| || | ||| ||||| |||| | | || | || || | Sbjct 13378309 GTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTATTTTTTCATTCTCG-A 13378251 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | || | || || || | || ||||| || || ||||| || || | ||| Sbjct 13378250 GCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTG 13378191 Query 160471 TGGGTATAGGCGGCGTGT-CTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| || ||| |||||| || |||| | || | ||| ||||| | Sbjct 13378190 TTTCAAGAGGAGG-ATGTATTTTGTCGGTCCCCATGTTTGTCAGCTTTCCATTCACGACT 13378132 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 || | |||| |||||||| | | || | | |||||| | || || ||||| || Sbjct 13378131 GCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCTGTTTCTAGGTTG 13378072 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || | || | | | || |||| | |||| || || ||||| || || | ||||| Sbjct 13378071 TTCTCGCCCATTAACAACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 13378012 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || ||||||| | ||||||| ||||||||| | ||| ||| || |||||| | Sbjct 13378011 TCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCGTTCATTCGGTAGAGGTCCTGC 13377952 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| || | || ||||| || |||||||| || || ||||| || |||| || | | Sbjct 13377951 ATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAACACTCTCCAGCTGA 13377892 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAA- 160825 |||||||| ||||| ||| |||||| || | || || ||| | |||| |||| | Sbjct 13377891 CTGGCCACGAAGACATTACTGAAACAGGATGCAATGCCAATCACTGCGGCCAAAAAGGAT 13377832 Query 160826 -CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884 | ||| || ||| |||||||| | |||||| | ||||||||| || || | Sbjct 13377831 TCCTCTGAT-----TTTGTATCCACGTGAATGCAATAGAAATTCTGAGGCATATAAATAG 13377777 Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944 |||| || | ||| || | ||| || || || ||||| | ||| | ||| || ||||| | Sbjct 13377776 CCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAGAATACGCTATTG 13377717 Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004 ||||||| | ||| || ||| |||| | | || || ||| ||||||| ||| Sbjct 13377716 GAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGCTTCTTGATGAAAG 13377657 Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032 || ||||||| | |||||||| || || Sbjct 13377656 AAGCACAATCACTGGTCATGTTTATGTA 13377629 >seq2563 Length=19862793 Score = 183 bits (202), Expect = 4e-41 Identities = 227/311 (73%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || |||||||||||| || Sbjct 17363147 AGAGTGAGGCAGGCTATTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTG 17363206 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| || |||| |||||||||||| || || | |||||||| ||| ||| Sbjct 17363207 TAACACCCTTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTGATGAGTCCC 17363266 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || ||||| | ||| || || ||||| || ||||||| | Sbjct 17363267 AGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGTTCTGG 17363326 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 || |||||| |||||| || ||||| ||||| || || ||||| || || |||||| Sbjct 17363327 CTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAGA 17363386 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | ||||| || ||||| | ||||| || |||||||||| |||| Sbjct 17363387 ACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAACTCTCTT 17363446 Query 168453 TCATCTTGAGT 168463 ||||||| || Sbjct 17363447 ACATCTTGGGT 17363457 Score = 111 bits (122), Expect = 2e-19 Identities = 159/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| || ||||||| ||| ||||| || || Sbjct 17360528 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGCAGTACCTGGCAGATCACATCC---TT 17360583 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || |||||||| || ||||| | || | ||||| || ||| ||| || ||||| Sbjct 17360584 CCCCACCTGACTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTCCCATT 17360643 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | | | | || |||||||||||| |||| || | ||||||||| | || Sbjct 17360644 GGGGTGTGAGAGAATCTCAGTACTGTTCTCAATCTCTGAGCCAGAGACCTTCCAGGAGAT 17360703 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || || || | |||||||| || ||||||| Sbjct 17360704 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 17360744 >seq1120 Length=7927523 Score = 107 bits (118), Expect = 2e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| |||||| | | ||||| ||| Sbjct 6445759 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 6445818 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 6445819 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 6445878 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 6445879 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 6445938 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 6445939 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 6445998 Query 176422 TACA 176425 | || Sbjct 6445999 TGCA 6446002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577141448573760