Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq8555 91.5 3e-13 seq4225 89.7 9e-13 >seq8555 Length=10321147 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| ||| Sbjct 2780824 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCT 2780883 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| ||||||||||| || | ||| || || |||||||| |||||||| || || || Sbjct 2780884 AGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGG 2780943 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | || || || ||||| || || || Sbjct 2780944 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTC 2781003 Query 193332 CCTGTTAGCGTTTTTACAAATAT 193354 || || | || || || || || Sbjct 2781004 CCCGTCACGGTCTTCACGAAAAT 2781026 >seq4225 Length=13699901 Score = 89.7 bits (98), Expect = 9e-13 Identities = 116/159 (73%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| || | ||| || || | |||||| ||||||||||| Sbjct 3551476 ATCCTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTT 3551417 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| || ||||| |||| ||||| | ||||| || Sbjct 3551416 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGAT 3551357 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| || || || | || || ||||| || Sbjct 3551356 GGTCTT-CCTGTCAGGGTCTTCATGAAAATCTGCATCTT 3551319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899533216552320