Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1386 111 2e-19 seq7110 86.0 9e-12 >seq1386 Length=4420875 Score = 111 bits (122), Expect = 2e-19 Identities = 394/617 (64%), Gaps = 45/617 (7%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| ||||||||| || |||||| || | ||| || ||| || | Sbjct 837511 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 837570 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 |||||||| | ||||| |||||| ||||| ||||||||||| ||| || ||||||||| Sbjct 837571 CCGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 837630 Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGC------------AAAACTGTA 18324 || || || || ||| || || |||| || | ||| | || | || Sbjct 837631 ATTCCTTCCACTGCA-GCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCC 837689 Query 18325 TTTA--TT---GCTCAGT-----ATCCATTTTTGT-----------------GCCCATTC 18357 ||| || | || | || | | ||||| ||||| || Sbjct 837690 ATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATC 837749 Query 18358 TCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTT 18417 | | | | ||| || || |||| ||||| || || | | || ||||||| Sbjct 837750 TGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTT 837809 Query 18418 GGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCAT 18477 ||||||||| || |||||||| || | | | ||||||||||||||| ||| ||||||| Sbjct 837810 GGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCAT 837869 Query 18478 AGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA--TCTCGCTATAAAAT 18535 || || | || | ||| || | | || || | | |||| ||| | |||| | Sbjct 837870 GGCAATTAGGAAGCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTG-GCTAAACT 837928 Query 18536 CTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATAT 18595 | ||||| || ||||| ||||| || ||| | ||| || || |||| ||||| Sbjct 837929 -GCTAAACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGC 837987 Query 18596 TTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGATAGA 18655 |||||||| | | || | | ||| || | ||| | | || || || || || Sbjct 837988 AAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGG 838047 Query 18656 TCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATAAATATCT 18715 || || ||||| | ||||||||| || | || || | || ||||| | ||||||| Sbjct 838048 TCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCA 838107 Query 18716 TCATGTTGTATAGGAAA 18732 | | || |||||||| Sbjct 838108 TGGTATTCGATAGGAAA 838124 >seq7110 Length=16720443 Score = 86.0 bits (94), Expect = 9e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| ||||||||| || |||||| || | ||| || ||| || | Sbjct 13122253 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 13122194 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 |||||||| | |||| ||| || ||||| ||||||||||| ||| || ||||||||| Sbjct 13122193 CCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 13122134 Query 18278 ATACCCTCAAC-GCACGCGAACGCTA 18302 || || || || ||| || || |||| Sbjct 13122133 ATTCCTTCCACTGCA-GCAAAGGCTA 13122109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731773416841600