Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3672 105 1e-17 seq4225 102 2e-16 seq4888 96.9 7e-15 seq5888 95.1 2e-14 seq2941 95.1 2e-14 seq975 91.5 3e-13 seq7110 86.0 1e-11 seq1386 86.0 1e-11 >seq3672 Length=15443579 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| ||| ||| || || || || |||| Sbjct 13644568 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGA-ATGTTGTAGTCAG 13644510 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| | Sbjct 13644509 ACAAAGTACGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 13644450 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| || || || || || ||||| || ||| | ||| || | ||| | Sbjct 13644449 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGA 13644390 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| ||||| || || || | || || | || |||||||| || Sbjct 13644389 CCTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 13644338 >seq4225 Length=13699901 Score = 102 bits (112), Expect = 2e-16 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || |||||| | || | |||| |||| ||| || |||||||||| Sbjct 3551509 CTTTTGA-ATGTTGTAGTCAGATGAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAAGA 3551451 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| || || | ||| || |||||||||||||| || || || |||||||| Sbjct 3551450 TCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTT 3551391 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | |||||| | ||| || | ||||| ||||| || || || | || || || | Sbjct 3551390 CTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCATGA 3551332 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 3551331 AAATCTGCATCTT 3551319 >seq4888 Length=12843668 Score = 96.9 bits (106), Expect = 7e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | || || | ||| | ||| | ||| ||| ||| | || | |||| Sbjct 850559 ACCACCGTGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAG-TGTTGTGGTCAG 850501 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| | || |||| ||| || ||||||||||| | ||| || || ||||| | Sbjct 850500 ACAAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 850441 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| | | | ||| | | ||| | Sbjct 850440 GAATTCCTTCCTTATCGTGGATCTTGGCGTTTACATTTTCTGTTGTATCCAAGGGTTCGA 850381 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| ||||| || || || | || || | || |||||||| || Sbjct 850380 CCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 850329 >seq5888 Length=21378709 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | | ||| | ||| | ||||| ||| ||| || || || || |||| Sbjct 13335861 ACCACCATGAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 13335919 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | | | || || ||||| | Sbjct 13335920 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTGTTTGCTGGTCAGGAG 13335979 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT-TATAGAATCTGACGATTCT 192486 | |||||||| || || || | || |||||||| | ||| | ||| || | ||| Sbjct 13335980 GAATTCCTTCCTTGTCCTGGCTCTTGGCCTTTACATTTTTCTATTGCATCCGAGGGTTCA 13336039 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| |||| | || || | || || | || |||||||| || Sbjct 13336040 ACCTCGAGAGTGATGGCCATCCCTGTCAGGGTCTTCAAGAAAATCTGCATATT 13336092 >seq2941 Length=1025224 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | | ||| | ||| | ||| | ||| ||| || || || || |||| Sbjct 785947 ACCACCATGAAGTCTCACTACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 785889 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| | Sbjct 785888 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGG 785829 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 |||||||| || || || || || |||||||| ||| | ||| | | ||| | Sbjct 785828 AAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAA 785769 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 | | ||||| ||||| || || || | || || || || ||||||| Sbjct 785768 CCTTGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCATGAAAATCTGCA 785722 >seq975 Length=6303504 Score = 91.5 bits (100), Expect = 3e-13 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || ||||||||||| | ||| || || ||||| || |||||||| | Sbjct 4298490 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCT 4298549 Query 192440 TATCTTGTATTTTATTTTTTACATTAGT-TATAGAATCTGACGATTCTACTTCTAGAGTA 192498 |||| || || || |||||||| | | | | |||||| | ||| ||||| ||||| Sbjct 4298550 TATCCTGGATCTTGACCTTTACATTTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAGTG 4298609 Query 192499 ATGGT-TTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 ||||| | |||| || || || || || ||||||| Sbjct 4298610 ATGGTCATCCCCAG--AAGGTCTTCATGAAAATCTGCA 4298645 >seq7110 Length=16720443 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || ||||| ||| |||||||||||||| || |||| |||||| ||| || | Sbjct 13122253 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 13122194 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 || ||||| | ||||| || || ||||| ||||| ||||||||| || ||||||||| Sbjct 13122193 CCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 13122134 Query 49944 ATACCCTCGACACACGCAAATGCTA 49968 || || || || ||||| |||| Sbjct 13122133 ATTCCTTCCACTGCAGCAAAGGCTA 13122109 >seq1386 Length=4420875 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || ||||| ||| |||||||||||||| || |||| |||||| ||| || | Sbjct 837511 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 837570 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 || ||||| | |||| ||||| ||||| ||||| ||||||||| || ||||||||| Sbjct 837571 CCGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 837630 Query 49944 ATACCCTCGACACACGCAAATGCTA 49968 || || || || ||||| |||| Sbjct 837631 ATTCCTTCCACTGCAGCAAAGGCTA 837655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984344075307600