Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2230 104 4e-17 seq4225 102 1e-16 >seq2230 Length=20112346 Score = 104 bits (114), Expect = 4e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || ||||| | | ||||| || | | ||| | ||| | ||| || | | || Sbjct 5902865 TTTCTTAGTACCAGCACAAAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGACTGTT 5902806 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || ||||||||||| ||||| || || Sbjct 5902805 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTTTGCTG 5902746 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 || || || ||| |||| |||||||| || || |||||||| | | ||||| || Sbjct 5902745 GTTAGAAGGAATTACTTCCTTATCTTGGATCTTGGCGTTTACATTTTCTGTTGTATCCGA 5902686 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || ||||| ||||| || || || | | || | || |||||||| Sbjct 5902685 GGGTTCGACCTCGAGAGTGATGGTCTTCCCTGTCAGGATCTTCACAAAAATCTGCAT 5902629 >seq4225 Length=13699901 Score = 102 bits (112), Expect = 1e-16 Identities = 135/186 (73%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || ||| ||| | | || |||| ||| || |||||||| || | ||| Sbjct 3551503 AATGTTGTAGTCAGATGAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAAGATCAGTCT 3551444 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || |||| ||| || |||||||||||||| || || || |||||||| ||| || Sbjct 3551443 TTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGT 3551384 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||||| | ||| || | ||||| ||||| || || || | || || ||||| ||||| Sbjct 3551383 ATCTGAAGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCATGAAAATCTG 3551325 Query 172067 CATTTT 172072 ||| || Sbjct 3551324 CATCTT 3551319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905014078180800