Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1386 111 5e-19 seq909 86.0 2e-11 >seq1386 Length=4420875 Score = 111 bits (122), Expect = 5e-19 Identities = 284/422 (67%), Gaps = 18/422 (4%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || | || | || ||||||||||||||||| ||| | | | Sbjct 838133 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 838074 Query 133136 TTATTTTGGACTTCAACTGAAG---TAGATTTATCCAAAGACC--CAGCCCACTGGGAAG 133190 | |||||||| | |||||| | || | ||||| ||| |||| ||||||||| Sbjct 838073 TCCTTTTGGAC---AGCTGAAGAGGTGGACCTTTCCAAGGACATTCAGC--ACTGGGAAG 838019 Query 133191 CCCTTACTGGGGATGAAAAACATTTTA-TTTCTATGATTTTAGCGTTTTTTGCTGCGAGT 133249 |||| | || || | | |||| | ||| ||| || | || || ||||| || ||| Sbjct 838018 CCCTGAAGCCTGAGGAGAGATATTTCATTTTGCATG-TTCTGGCTTTCTTTGCAGCAAGT 837960 Query 133250 GATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAA 133309 ||||| || || |||||| || | | ||||| ||||||||| | | ||| Sbjct 837959 GATGGCATAGTAAATGAAAACTTGGTTTAGCAGTTTAGCCAAGAAGTTCAGATTACGGAA 837900 Query 133310 GCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT--ATCACATATT 133367 ||| || || ||||| | | ||||| |||||||| ||||||||| | ||| | Sbjct 837899 GCCTGTTGTTTCTATGGCTTCCTAATTGCCATGGAAAACATCCATTCTGAAATGTATAGT 837840 Query 133368 CTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCA 133427 || ||| ||||| |||||||| |||||| || | | | | || |||||||| | Sbjct 837839 CTCCTC--ATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAACGCTA 837782 Query 133428 TTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGAC 133486 || | || | | |||||| | || ||||| | || ||||| | |||||| |||| Sbjct 837781 TT-GAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATCGGGGAC 837723 Query 133487 AA 133488 || Sbjct 837722 AA 837721 >seq909 Length=8853351 Score = 86.0 bits (94), Expect = 2e-11 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| || || || || ||||||| ||||| ||||| Sbjct 2132253 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCGATGAGCCCCTCACGACCCCCCATGGCATG 2132194 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | ||| || ||| || || | | ||||| |||| || || ||||| Sbjct 2132193 GAAGAAGAACTCGGTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCACGGC 2132135 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||| ||| || || ||| | ||||| ||||| |||| || || | || | | Sbjct 2132134 TCTCAGGCCCATAATCATCTTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAACCCAAACG 2132075 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||| ||||| || || ||||||||||| || Sbjct 2132074 GGATCCGCTTGCCCTCCACGTTCTGCTGCCC 2132044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471614389823512