Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5555 116 3e-21 seq920 114 1e-20 seq3672 105 5e-18 seq8555 102 6e-17 seq2230 98.7 8e-16 seq9777 95.1 9e-15 seq2941 93.3 3e-14 seq4225 87.8 1e-12 seq975 84.2 2e-11 >seq5555 Length=11985078 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| |||| || || ||||| ||||| || ||||| || || | Sbjct 7696266 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7696325 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || ||| | ||||| || ||||| || || || Sbjct 7696326 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7696385 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | || ||||| | || | |||||| | || || Sbjct 7696386 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 7696445 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || ||||| || || || |||||||| Sbjct 7696446 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7696492 >seq920 Length=9572204 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 2426411 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 2426470 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||| ||| | |||| ||||||||| || || ||||| || || ||||| Sbjct 2426471 TTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 2426530 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| | || || |||| || |||||||| || || Sbjct 2426531 CTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTCGACCTCAAGAGTGATGGT 2426590 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || || || |||||||| || Sbjct 2426591 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 2426626 >seq3672 Length=15443579 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||| | || ||||||||||| || || | | || || ||| Sbjct 13644553 CAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 13644494 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| || |||||| | |||| ||||||||| || || ||||| || || ||||| Sbjct 13644493 TTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 13644434 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || || |||||| || || || |||| || || ||||| || || Sbjct 13644433 CTGGATCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 13644374 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || || || |||||||| || Sbjct 13644373 CTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 13644338 >seq8555 Length=10321147 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 2780820 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 2780879 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| || || ||| | |||| ||||||||| || || ||||| || || ||||| Sbjct 2780880 TTCTAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 2780939 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || ||||| || || Sbjct 2780940 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 2780999 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCT 29782 || || || | ||| || || || |||| Sbjct 2781000 CTTCCCCGTCACGGTCTTCACGAAAATCT 2781028 >seq2230 Length=20112346 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || |||||| |||| || || | | || || ||| || ||||| Sbjct 5902832 ATGAAGAGTGGACTCCTTTTGACTGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTG 5902773 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||||||||||||| | | ||||| | || || ||||| | || Sbjct 5902772 CTTGCCAGCAAAAATCAATCTTTGCTGGTTAGAAGGAATTACTTCCTTATCTTGGATCTT 5902713 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| ||||| || || || |||| || || ||||| || || || || || Sbjct 5902712 GGCGTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCTGT 5902653 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | | | || ||||| |||||||| Sbjct 5902652 CAGGATCTTCACAAAAATCTGCAT 5902629 >seq9777 Length=8339292 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||| || |||| || || || || ||||| || ||||| ||||| | | Sbjct 5690785 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 5690844 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 ||| | ||| || || |||||||| ||| | || | || ||||| || || || Sbjct 5690845 GGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 5690904 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| || || | || || || | || | |||||| | || || Sbjct 5690905 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 5690964 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || |||||||| ||||| || || || ||||||||||| Sbjct 5690965 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 5691014 >seq2941 Length=1025224 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||||||| || || | | || || ||| || ||||| Sbjct 785923 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTG 785864 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||| ||||||||| || || | ||| || || ||||| || | || Sbjct 785863 CTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTTGTCCTGGATCTT 785804 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| |||||| || || | |||| || | ||||| || || || || || Sbjct 785803 GGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTTGAGAGTGATGGTCTT-CCTGT 785745 Query 29763 TAAGGTTTTAACAAATATCTGCA 29785 | ||| || | || ||||||| Sbjct 785744 CAGGGTCTTCATGAAAATCTGCA 785722 >seq4225 Length=13699901 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/203 (70%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 29589 CGTGGATTCTTTTTGAATGTTATAATCCGCAATG--GTGCGAGAATCATCGAGTTGTTTG 29646 |||||| || ||||||||||| || || | ||| || | ||| || ||||| ||| Sbjct 3551518 CGTGGACTCCTTTTGAATGTTGTAGTCAG--ATGAAGTATGGCCATCCTCCAGTTGCTTG 3551461 Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| | |||| ||||||||| | || || || || ||||| || || | || Sbjct 3551460 CCAGCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCC 3551401 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| |||||| || || ||| |||| || | ||||| || || || || || | | Sbjct 3551400 TTTACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTT-CCTGTCAGG 3551342 Query 29767 GTTTTAACAAATATCTGCATTTT 29789 || || | || |||||||| || Sbjct 3551341 GTCTTCATGAAAATCTGCATCTT 3551319 >seq975 Length=6303504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/205 (70%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||||||| || || | || | ||| || ||||| Sbjct 4298447 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACATCCATCTTCCAGTTG 4298502 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||| ||||||||| || || ||||| || || || || || | || Sbjct 4298503 CTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 4298562 Query 29703 TTGTTTGACA-GTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT-TTTGCCA 29760 || ||| ||||| || || || |||| ||||||||||| || || | ||| Sbjct 4298563 GACCTTTACATTTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAGTGATGGTCATCCCCA 4298622 Query 29761 GTTAAGGTTTTAACAAATATCTGCA 29785 | ||||| || | || ||||||| Sbjct 4298623 G--AAGGTCTTCATGAAAATCTGCA 4298645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385168608199416