Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq1341 150 2e-31 seq8888 98.7 9e-16 >seq1341 Length=25394359 Score = 150 bits (166), Expect = 2e-31 Identities = 606/946 (64%), Gaps = 45/946 (5%) Strand=Plus/Plus Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||||||||||||||| | || || |||||||||||||| || || || ||||| Sbjct 20975708 AAGACCCTAGCTGCCATAGGGACAGGATTTGACTGTGCCAGCAACACTGAAATCCAGTTG 20975767 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 ||| ||| || || | | || ||||| | | ||| ||||||| ||| || Sbjct 20975768 GCGCAGGGTCTCGGGGTGCCTCCTGAGAGGATTTTCTATGCAAATCCTTATAAACAAGTG 20975827 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | || || || | | |||||| | ||||||||||||||||||||| Sbjct 20975828 TCTCAGATTAAATACGCTGCCAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAGTT 20975887 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||| | | ||| ||| | || | | || ||| |||| || |||| | Sbjct 20975888 GAGTTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCAGATTGCCACG 20975947 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || |||||||| ||||| || | | || ||||| Sbjct 20975948 GATGATTCCAAAGCAGTCTATAGCCTCAGTGTCAAATTTGGTGCCACACTAAAAACCAGC 20976007 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | || || ||| ||| ||| | ||| | || || || || |||||||||||| Sbjct 20976008 AGGCTTCTTCTGGAACGGGCGAAAGAGCTAGATATTGATGTCATTGGTGTCAGCTTCCAC 20976067 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 ||||| ||||| | | ||| || | | | || | ||||| |||| ||| | | Sbjct 20976068 GTGGGAAGTGGTTCTACTGATCCAGGGACCTTCATGCAGGCCATCTCTGATGCCCGCTGT 20976127 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | |||||| | || ||||| | || || ||||||| || | || |||||||| | Sbjct 20976128 GTCTTTGACAT--GCGAGCTGAGGTTGGTTTCAACATGTATCTGCTTGACATTGGTGGTG 20976185 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTA 20858 ||||| || ||||| |||| || ||| | ||||| || || | || || | Sbjct 20976186 GCTTT-CCTGGATC--TGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAGTGTAATCA 20976242 Query 20859 ACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTG 20918 || | || ||||| | | ||||||| || | ||| ||| || | ||| || | Sbjct 20976243 ACCCAGCGTTGGACAAGTATTTTCCGTTAGACTCTGGAGTGAGAATCATAGCTGAGCCAG 20976302 Query 20919 GCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GTG 20976 | || ||||| | | | || || | || || | | | | | ||||| ||||| | Sbjct 20976303 GAAGATACTATGTTGCATCAGCTTTCACGCTAACAATTAATATCATTGCCAAAAAACTCG 20976362 Query 20977 TGTTGAAG--ACA------CTC-----CTGGAGA---------TAAAAAG---TTTATGT 21011 | || ||| ||| ||| || ||| | || || ||||||| Sbjct 20976363 TATTAAAGGAACAGACAGGCTCTGATGATGAAGATGAGTTGAGTGAACAGACATTTATGT 20976422 Query 21012 ATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTC 21071 ||||||| |||||||| || ||||| || |||||||| | || | ||||| | Sbjct 20976423 ATTATGTGAATGATGGAGTATATGGATCATTCAACTGCATCCTCTTCGATCATGCACACG 20976482 Query 21072 CTATGCCTATGCTGCTTAAAGAA-AAACGCCTTGAAGACAAAGACTATGTTTC---TAGC 21127 | |||| | |||| |||| | || | ||| || | ||| ||| |||| Sbjct 20976483 TGAAGCCTCTTCTGC----AGAAGAGACCCAAACCAGATAAGAAGTATTATTCATGTAGC 20976538 Query 21128 ATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAG 21187 || ||||| || | ||| |||||| | ||| ||| |||| | || | | | |||| || Sbjct 20976539 ATCTGGGGACCAACCTGTGATGGCCTGGATCGCACTGTTGAACGCTATAACTTGCCCAAG 20976598 Query 21188 CTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 | || ||||| || ||| | | |||||||||||||| ||||||| Sbjct 20976599 ATGCATGTGGGTGATTGGATGTTCTTTGAAAACATGGGTGCTTACA 20976644 >seq8888 Length=9016713 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/177 (74%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | ||| |||||| | ||| |||||||| |||| ||| | || Sbjct 1433239 TCCAGCATCTGGGGACCGACCTGTGATGGCCTGGATCGCATTGTTGAGCGCTGTAACTTG 1433298 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || ||| | || |||||||| ||| | | |||||||||||||| ||||||| || | Sbjct 1433299 CCCGAGATGCATGTGGGCGATTGGATGCTCTTTGAAAACATGGGTGCTTACA-CTGTCGC 1433357 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| |||| || || || || || ||| || | || | | ||||||| || |||| Sbjct 1433358 TGCTGCTTCCACTTTCAATGGATT-CCAGAGACCGACCATCTACTATGTGATGTCAG 1433413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463483160407680