Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq5555 257 1e-63 >seq5555 Length=11985078 Score = 257 bits (284), Expect = 1e-63 Identities = 494/719 (69%), Gaps = 52/719 (7%) Strand=Plus/Plus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130 ||||||| ||||||||||||||||||| ||||||| |||| || | | | |||||||| Sbjct 5536271 CCACAGCCCTAGCTTCTGGTCTGAAAA-GAGTAGGCTTCTTCTGGGGGCAATGGAAGGCA 5536329 Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGTT 1190 ||||||||||| ||| ||||| |||||| | |||||||||| || || | || |||| Sbjct 5536330 TTTTAAAGAAATGGCAGGGAAAAGAAATCTCGAGGGCACTTACGTAGTCATTCAAGAGTT 5536389 Query 1191 TTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCCGTGGTAG----T 1246 | ||| ||| || ||| ||| |||||| |||| |||| | || || ||| | Sbjct 5536390 TCTCAAACGAGGACCGTAATTCCTTGATTATAGCTTGTTGTTTATCTGGTCCTAGCATAT 5536449 Query 1247 GGATGGCCG--TGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGCC 1304 | |||| |||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 5536450 AGGGTGCCGTATGGGAGGAGAGCAAGGCTCCCGAACAGCAGAGCAGGAACAGGGCAAACC 5536509 Query 1305 CTGAAGATTTTGTAAAAATAGAGTAATGCCCACACACCCCCACCTGCCCCATACCTTAAC 1364 | |||| || | ||| || || || || | | || || || ||| | | Sbjct 5536510 TGGCAGATCCTGGAGAAAGAGGGTGAT--CCCCGGAGGAGCAGAGGCTGCACACCCCAGC 5536567 Query 1365 CTG--CCCAAGCTTTCACCACCGAAGCTG-TGCCG------GACTGAGCCCCATCCAGTC 1415 | | ||| |||| ||| | | || | || || | ||||||||| ||||| | Sbjct 5536568 CCGCCCCCCGGCTTCAACCGCTCAGGCCGTTGTCGAGCAGTGGCTGAGCCCC-TCCAGCC 5536626 Query 1416 TTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGACCTAT 1475 || |||| ||||| | || || |||| | || | |||| | | ||| Sbjct 5536627 TTCCTCTCTGTCTGGTGAGACCCGACTGTGCC---------CCGTGGCCGCGGCACCCCG 5536677 Query 1476 CGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAACAGCTG 1535 | |||||| | |||| || || | |||||||||||| || | || ||||||||| Sbjct 5536678 TGGTACCTGCGTGGGAGACCATGGTGGGAGAGAGCGAG---GCTGTTTCAGCAACAGCTC 5536734 Query 1536 CTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAG 1595 || || ||||||||||| || | || ||| | ||| |||||||| | | | || Sbjct 5536735 CTGGACCCGGATGTGCTCGCCATGGTCTTCAGGAGC--TATGTAAAGGGCCAATGGCGAG 5536792 Query 1596 ---GAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT-----------CAGAAA 1641 |||| ||| | | | || |||| || ||| |||||||| |||||| Sbjct 5536793 GAAGAGGGGCAATCACTCTCCCACCCATGGCAAAATCATTACTCAGCTTTTTCCCAGAAA 5536852 Query 1642 ACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAA---TGA 1697 ||| ||||||| | ||||| | | ||| | | | || |||| |||||||| ||| Sbjct 5536853 ACACTTTCAAAAGTCTGCCACCCAAGGCTGGGTGAGAACAGGGCTGGAAGGAAATGCTGA 5536912 Query 1698 AGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGGGCACCCACA 1756 |||||||| ||| |||||||| || ||| || | || ||||||| | ||||| |||| Sbjct 5536913 GGTTACCCTCAAGGTGGGCAGACGCCTGATTCAGTACAGATACACA-CAGGCACACACA 5536970 Score = 163 bits (180), Expect = 2e-35 Identities = 338/495 (68%), Gaps = 41/495 (8%) Strand=Plus/Plus Query 287 AACAACTTACAGCAGAATTCTCGTACACAGAGGGCACTAA---------TCTTAAGGCTC 337 || |||| |||||||||||||| || || | |||| | | |||||||| Sbjct 5534614 AATAACTCACAGCAGAATTCTCACACTTAGCTGTCACTCATTTTTTTTTTTTTAAGGCTT 5534673 Query 338 TTTGCATTCCTGCCATT-CAAAAGGAACAGGGTCAACCACATGGTCTTCAGTGACCT--- 393 |||||| |||||||| |||||||| |||| ||||||| |||| || | |||||| Sbjct 5534674 CATGCATTTCTGCCATTCCAAAAGGACCAGGTTCAACCAGATGGCTTTAAATGACCTACT 5534733 Query 394 ----TCCAGGCTTCAGTG---CCCACTAATTTCAGGCACTTTGAAAACATTTCTAAAACA 446 ||||| |||| || || ||||||| ||| ||||||| ||| ||||| | Sbjct 5534734 GGGCTCCAGCGTTCAATGATTTAAACAGATTTCAGAAACTCTGAAAACTTTTTTAAAATA 5534793 Query 447 CACTGTATGAACACtttttt---ttGATAGCTGTCTGTAGGCATAGAAA------TGTCT 497 || ||||| ||||||| || | |||| |||||||||| ||||| | ||| Sbjct 5534794 GACACGATGAA-GCTTTTTTACATTTAAAGCTCTCTGTAGGCACAGAAACCTTTGTTTCT 5534852 Query 498 GGTGCGCGTTGCAATTCAAGTTTTTTGAGATGGTCCATGACATCAGTAAAACT--ATTTG 555 ||| | || | |||| ||||| |||||||||| |||| || | |||| | || Sbjct 5534853 GGTTCATGTCGAGATTCGAGTTTACTGAGATGGTCTGTGACGGCA--ACAACTTGAGTTT 5534910 Query 556 TGTCATTAAAAAATGATTTGATGGCTCTAAAATAAGGCAGGATGGCTGAACTGTTGATGT 615 || || ||| ||| |||||| ||||| | ||||||| | ||||||| | || | Sbjct 5534911 CGTTATGGAAAGATGGTTTGATCGCTCTGCAGTAAGGCAAG-TGGCTGAGCAGTCCTCGC 5534969 Query 616 TGTGTGGTGGCTGGGGGCTCACAGAAAAGCACTGCATGCGGCACGTGCATGATTTTACTA 675 ||| ||| |||||||| ||| || || | |||| || || || || || Sbjct 5534970 TGTATGGCAGCTGGGGGTTCAGAGCGAAATGCGGCATCTGGTAC-TGGCTGCGTTCCGGC 5535028 Query 676 ATCCCTTATTCTCTTTCTGCTTCTGTG---GAAGGAGAGGAAATGGGTGAGCATTAGTGT 732 | ||| |||||| ||||| ||||| |||||| |||| ||||||||| ||||| | Sbjct 5535029 ACTCCT--CTCTCTTCCTGCTGCTGTGTAACAAGGAGGGGAAGTGGGTGAGCGTTAGTTT 5535086 Query 733 TGTAAAGCAGTCAGA 747 || ||| ||| |||| Sbjct 5535087 TGCAAAACAGCCAGA 5535101 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 169 CACACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCA 228 || |||| | | |||||| ||| ||| ||||||| ||| |||||||||||| ||| || Sbjct 5534306 CAAACAAAACGCCAAACAGAGTATGAGACAAATTCAATATCATTTATTAAATAGTTTCCA 5534365 Query 229 AGGGCTTCTTTAAGAAGCATTAACAATCT 257 |||||| || ||| |||||||||||||| Sbjct 5534366 AGGGCTCCTCCAAGGAGCATTAACAATCT 5534394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438500925968000