Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5555 111 1e-19 seq1564 84.2 1e-11 seq2575 82.4 5e-11 >seq5555 Length=11985078 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | |||| || |||||| |||||| || |||||||| || | Sbjct 7696264 CACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 7696323 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | | Sbjct 7696324 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 7696383 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || ||| || | | | || | |||||| || | ||| Sbjct 7696384 GGATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCC 7696442 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || ||||| || || || || || ||||||||||| Sbjct 7696443 ACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7696492 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| ||| |||||| |||||| || |||||||| || || Sbjct 7696494 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7696553 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 7696554 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7696613 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 7696614 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 7696672 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 7696673 CTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7696720 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| ||| |||||| |||||| || |||||||| || || Sbjct 7696722 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7696781 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 7696782 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7696841 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 7696842 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 7696900 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 7696901 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7696948 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| ||| |||||| |||||| || |||||||| || || Sbjct 7696950 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7697009 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 7697010 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7697069 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 7697070 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 7697128 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 7697129 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7697176 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| ||| |||||| |||||| || |||||||| || || Sbjct 7697178 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7697237 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 7697238 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7697297 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 7697298 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 7697356 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 7697357 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7697404 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| ||| |||||| |||||| || |||||||| || || Sbjct 7697406 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7697465 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 7697466 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7697525 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 7697526 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 7697584 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 7697585 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7697632 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| ||| |||||| |||||| || |||||||| || || Sbjct 7697634 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7697693 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 7697694 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7697753 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 7697754 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 7697812 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 7697813 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7697860 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| ||| |||||| |||||| || |||||||| || || Sbjct 7697862 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7697921 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 7697922 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7697981 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 7697982 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 7698040 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 7698041 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7698088 >seq1564 Length=3672159 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| ||| | |||| || || || |||||| || ||||||||||| || Sbjct 1054189 ACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 1054248 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| ||||| || ||||| || | | |||||| || | || Sbjct 1054249 AAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1054308 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || ||| || | || | |||||| || | |||| Sbjct 1054309 GATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCA 1054367 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 1054368 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 1054417 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || || || |||||| || ||||||||||| || Sbjct 1053962 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1054021 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| || ||||| || | | |||||| || | || Sbjct 1054022 AGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1054081 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || ||| || | || | |||||| || | ||||| Sbjct 1054082 ATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCAC 1054140 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || |||||||||||| Sbjct 1054141 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 1054189 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| ||| | |||| || || || ||| || || ||||||||||| || Sbjct 1054645 ACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGA 1054704 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| ||||| || ||||| || | | |||||| || | || Sbjct 1054705 AAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1054764 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || ||| || | || | |||||| || | |||| Sbjct 1054765 GATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCA 1054823 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || || || || || ||||||||||| Sbjct 1054824 CCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 1054872 >seq2575 Length=1273154 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || | || |||||| || ||||||||||| || Sbjct 238766 CCACCCCTCAGACGGAGGACCAGGTGCAATGTTGACTCTTTCTGGATGTTGTAATCAGAA 238707 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||| | || |||| ||||| || ||||| || || | ||||| || | || Sbjct 238706 AGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAACCTCTGCTAGTCAGGGGGG 238647 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || ||| |||| || | |||||| || || ||||| Sbjct 238646 ATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACATTCTCGATGGTGTCACTGGACTCCAC 238588 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || |||||||||||| Sbjct 238587 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 238539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328660830481920