Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3672 138 3e-27 seq8555 134 3e-26 seq920 129 1e-24 seq2941 123 6e-23 seq4777 122 2e-22 seq5888 114 3e-20 seq975 100 7e-16 seq2230 96.9 8e-15 seq1564 84.2 5e-11 >seq3672 Length=15443579 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || |||||| | || || ||| || || ||| | ||| Sbjct 13644356 AAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGATACAATAGAAAAC 13644415 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 13644416 GTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 13644475 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| ||||||||||| | |||||| | || |||||| | || || |||| Sbjct 13644476 GCTGGAAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTTC 13644535 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 13644536 ACTCTTCATCTTGTGTTGAGACTTCG 13644561 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| |||| || || | || ||||||| |||||| Sbjct 13644561 CGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 13644502 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| |||||||| || ||||| || | ||| || Sbjct 13644501 CGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTG 13644458 >seq8555 Length=10321147 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||| | || || ||| || || ||| | ||| |||||| Sbjct 2781008 ACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGATACAATAGAAAATGTAAAGGCC 2780949 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||||||| || ||| |||||||| ||||| ||||||||| Sbjct 2780948 AAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCCGGAAAG 2780889 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||||||| | |||||| | || |||||| | || || ||||| |||||||| Sbjct 2780888 CAACTAGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCAT 2780829 Query 206374 CTTGTTTTGAGACTTCG 206390 ||||| ||||||||||| Sbjct 2780828 CTTGTGTTGAGACTTCG 2780812 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 2780812 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 2780871 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||||||| || ||||||||||| ||||| || | ||| || Sbjct 2780872 CGTCCATCTTCTAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTG 2780915 >seq920 Length=9572204 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || ||| || || || | ||| Sbjct 2426608 AAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCCTCAGATGCAATAGAAAAT 2426549 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 2426548 GTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 2426489 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 2426488 GCAGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 2426429 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 2426428 ACTCTTCATCTTGTGTTGAGACTTCG 2426403 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 2426403 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 2426462 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || || ||||| || | ||| || Sbjct 2426463 CGTCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTG 2426506 >seq2941 Length=1025224 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||| | | |||||| | | || ||| | || ||| | ||| Sbjct 785736 AAGACCCTGACAGGAAGACC-ATCACTCTCAAGGTTGAACCCTTGGATACAATAGAAAAT 785794 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || |||||||||| || ||| |||||||| ||||| Sbjct 785795 GTAAAGGCCAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGCAAAGACTGATCTTT 785854 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 785855 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 785914 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| ||||| ||||||||| Sbjct 785915 ACTCTTCATCTTGTAGTGAGACTTC 785939 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 ||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| | Sbjct 785939 GAAGTCTCACTACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 785880 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||| ||||| || || ||||| || | ||| || Sbjct 785879 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 785837 >seq4777 Length=16179633 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || ||| || || || | ||| Sbjct 14701922 AAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCCTCGGATGCAATAGAAAAT 14701981 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 14701982 GTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 14702041 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | | |||| | || |||||||| || || ||||| Sbjct 14702042 GCAGGCAAGCAACTGGAAGATGGACGTATTTTGTCTGACTACAACGTTCAAAAGGAGTCC 14702101 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 ||||||| ||||| |||||||||| Sbjct 14702102 GCTCTTCATCTTGTGTTGAGACTTC 14702126 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| ||||||| ||||| || || || || ||||||| |||| | | Sbjct 14702126 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATAC 14702067 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||| ||||| || || ||||| || | ||| || Sbjct 14702066 GTCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTG 14702024 >seq5888 Length=21378709 Score = 114 bits (126), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || | || || || ||||| | | |||||| | || || ||| || || Sbjct 13336086 CAGATTTTCTTGAAGACCCTGACAGGGATGGCCATCACTCTCGAGGTTGAACCCTCGGAT 13336027 Query 206233 ACAGTCGAATCA-GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| | |||||| |||| || || || ||||||||| || ||| || Sbjct 13336026 GCAATAGAAAAATGTAAAGGCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTGACCAGCA 13335967 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || ||| ||||| || || ||||| ||||||||||| | |||||| | || |||||| | Sbjct 13335966 AACACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACAT 13335907 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389 || || |||||||||||||| ||||| ||||||||| Sbjct 13335906 TCAAAAGGAGTCTACTCTTCATCTTGTAGTGAGACTTC 13335869 Score = 93.3 bits (102), Expect = 1e-13 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 ||||||||| ||||| |||||||||||||| || || | || ||||||| |||||| | Sbjct 13335869 GAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 13335928 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||| ||||| || || ||||| || Sbjct 13335929 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 13335962 >seq975 Length=6303504 Score = 100 bits (110), Expect = 7e-16 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 206203 ACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA-GTAAAGCAAAAGATTCA 206261 || |||||| | ||||| ||| || || ||| ||| | |||||| ||||| || Sbjct 4298614 ACCATCACTCTTGAAGTTGAACCCTCAGATACAACAGAAAAATGTAAAGGTCAAGATCCA 4298555 Query 206262 AGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGA 206321 || || ||||||||| || ||| |||||||| ||||| || || ||||| |||| Sbjct 4298554 GGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGA 4298495 Query 206322 AGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT-TGTTT 206380 ||||||| | ||||| || |||||| | || || ||||| |||||||| || | | Sbjct 4298494 AGATGGATGTACTTT----GACTACAACATTCAAAAGGAGTCCACTCTTCATCTAAATGT 4298439 Query 206381 TGAGACTTCG 206390 |||||||||| Sbjct 4298438 TGAGACTTCG 4298429 >seq2230 Length=20112346 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || | || ||||| || || |||||| | || || ||| || || Sbjct 5902632 CAGATTTTTGTGAAGATCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGAT 5902691 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| ||| ||||| ||||| ||||| || |||| |||| | || ||| Sbjct 5902692 ACAACAGAAAATGTAAACGCCAAGATCCAAGATAAGGAAGTAATTCCTTCTAACCAGCAA 5902751 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || || ||||| ||||||||||| | |||||| | || |||||| Sbjct 5902752 AGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACAGT 5902811 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388 || || ||||| |||||||| ||| | ||||||||| Sbjct 5902812 CAAAAGGAGTCCACTCTTCATCTTCTGTTGAGACTT 5902847 >seq1564 Length=3672159 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| |||| Sbjct 1054173 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 1054114 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || ||| || || || ||||| Sbjct 1054113 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTCATCTTT 1054054 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 1054053 GCGGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 1053994 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 1053993 ACCCTGCACCTGGT 1053980 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| |||| Sbjct 1054401 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 1054342 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || ||| || || || ||||| Sbjct 1054341 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTCATCTTT 1054282 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 1054281 GCGGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 1054222 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 1054221 ACCCTGCACCTGGT 1054208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181657628956696