Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq3285 116 1e-22 seq1430 107 6e-20 seq931 107 6e-20 seq2164 105 2e-19 seq9665 98.7 3e-17 seq9443 98.7 3e-17 seq5555 98.7 3e-17 seq1863 98.7 3e-17 >seq3285 Length=579426 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 384154 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 384095 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 384094 CCGGGTTTCAGC 384083 >seq1430 Length=4182701 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 2497926 GCTGAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 2497985 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 2497986 CCGGGTTTCAGC 2497997 >seq931 Length=6439615 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 4863337 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 4863396 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 4863397 CCGGGTTTCAGC 4863408 >seq2164 Length=1979221 Score = 105 bits (116), Expect = 2e-19 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCA 2825 |||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 692621 TGGCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTTAAAGGTCCCTGGTTCA 692680 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 692681 ATCCCGGGTTTCGGC 692695 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 1324152 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 1324093 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1324092 TCCCGGGTTTCGGC 1324079 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1296773 GCTGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1296832 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 1296833 CCGGGTTT 1296840 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 1434783 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 1434724 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1434723 CCCGGGTTTCGGC 1434711 Score = 98.7 bits (108), Expect = 3e-17 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| ||||||||| |||||||| |||||||||||||||||||||||||||||| | Sbjct 1277518 TGGCCGAAATAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 1277459 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1277458 TCCCGGGTTTCGGC 1277445 Score = 84.2 bits (92), Expect = 7e-13 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGA-AGATCTAAAGGTCCCTGGTTCAAC 2827 || ||| |||||||| ||||||||| ||||||||| |||||||| |||||||||||||| Sbjct 1303084 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGATAGATCTAAGGGTCCCTGGTTCAAT 1303025 Query 2828 CCCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1303024 TCCGGGTTTCGGC 1303012 >seq9665 Length=30569961 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 15759125 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 15759184 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 15759185 CCGGGTTTCGGC 15759196 >seq9443 Length=8705519 Score = 98.7 bits (108), Expect = 3e-17 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 8271091 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 8271032 Query 2829 CCGGGCTTC 2837 ||||| ||| Sbjct 8271031 CCGGGTTTC 8271023 Score = 91.5 bits (100), Expect = 5e-15 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||||||||||| |||||||||||| ||||||||||||||||||| | |||||| | Sbjct 8276795 TAGCTCAGTTGGGAGACCATTAGACTGAACATCTAAAGGTCCCTGGTTCGATCCCGGGTT 8276736 Query 2836 TCAGC 2840 || || Sbjct 8276735 TCGGC 8276731 >seq5555 Length=11985078 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 7709435 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 7709376 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7709375 CCGGGTTTCGGC 7709364 >seq1863 Length=2765139 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1884140 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1884199 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1884200 CCGGGTTTCGGC 1884211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847731926520