Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq920 116 3e-21 seq3672 113 4e-20 seq8555 109 5e-19 seq1564 107 2e-18 seq2575 98.7 9e-16 seq4777 95.1 1e-14 seq7443 91.5 1e-13 >seq920 Length=9572204 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 2426397 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2426456 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | |||||||| | |||| Sbjct 2426457 AAAGTACGTCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 2426516 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||| | | || | | | || | ||| ||| Sbjct 2426517 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTCGACC 2426576 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||||| || ||||| || |||||||| Sbjct 2426577 TCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 2426623 >seq3672 Length=15443579 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 13644567 CCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGAC 13644508 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | |||||||| | |||| Sbjct 13644507 AAAGTACGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 13644448 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||| | || | | || || | ||| ||| Sbjct 13644447 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACC 13644388 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || |||| || ||||| || |||||||| Sbjct 13644387 TCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 13644341 >seq8555 Length=10321147 Score = 109 bits (120), Expect = 5e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 2780806 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2780865 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || ||||| || ||||| |||| | |||||||| | |||| Sbjct 2780866 AAAGTACGTCCATCTTCTAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 2780925 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||| | | || | | || || | ||| ||| Sbjct 2780926 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACC 2780985 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCT 35732 || | ||||| || || ||||||| || ||||| || |||| Sbjct 2780986 TCGAGAGTGATGGTCTTCCCCGTCACGGTCTTCACGAAAATCT 2781028 >seq1564 Length=3672159 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || |||||||| || |||||||| Sbjct 1054681 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAA 1054740 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || ||||| ||| |||||| ||||| | Sbjct 1054741 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 1054800 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || ||||| || ||||| Sbjct 1054801 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCAC 1054860 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1054861 GAAGATCTGCAT 1054872 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || |||||||| || |||||||| Sbjct 1054453 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAA 1054512 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || ||||| ||| |||||| ||||| | Sbjct 1054513 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 1054572 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 1054573 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 1054632 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1054633 GAAGATCTGCAT 1054644 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || |||||||| || |||||||| Sbjct 1053997 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAA 1054056 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || ||||| ||| |||||| ||||| | Sbjct 1054057 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 1054116 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 1054117 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 1054176 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1054177 GAAGATCTGCAT 1054188 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || |||||||| || |||||||| Sbjct 1054225 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAA 1054284 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || ||||| ||| |||||| ||||| | Sbjct 1054285 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 1054344 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 1054345 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 1054404 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1054405 GAAGATCTGCAT 1054416 >seq2575 Length=1273154 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || | | || |||||||| || || ||||| Sbjct 238731 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAA 238672 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || |||| ||||| ||| | || | || ||||| ||| |||||| ||||| | | Sbjct 238671 GATAAACCTCTGCTAGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 238612 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || |||||||||| ||||| || || || |||| || ||||| Sbjct 238611 CTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 238552 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 238551 GAAGATCTGCAT 238540 >seq4777 Length=16179633 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||||||| | ||| | | ||||||||||| |||||| || | ||| | || | Sbjct 14702121 CTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCCA 14702062 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||| ||||| || ||||| |||| | |||||||| | ||||| | |||||| Sbjct 14702061 TCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTG 14702002 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| ||| | | || | | | || | ||| ||||| | ||||| Sbjct 14702001 TCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTCAAGAGTGATG 14701942 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||||| || ||||| || |||||||| Sbjct 14701941 GTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 14701907 >seq7443 Length=30544692 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || |||| |||||||| || || ||||| Sbjct 5029131 CTCTTTCTGGATGTTGTAATCAGAAATAGTGCGGCCGTCTTCCAGCTGTTTGCCTGCAAA 5029072 Query 35605 TATCAACCGCTGCTGGTC--CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGA 35662 || | || ||||||||| | || | || ||||| ||| |||||| ||||| | Sbjct 5029071 GATGAGCCTCTGCTGGTCGGGGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 5029012 Query 35663 GTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| || | |||||||||| ||||| || || ||||||| || ||| Sbjct 5029011 TTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 5028952 Query 35723 ACAAATATCTGCAT 35736 | || |||||||| Sbjct 5028951 CCGAAGATCTGCAT 5028938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450732878102080