Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1386 351 1e-91 seq7110 306 5e-78 seq8888 129 8e-25 seq1508 123 3e-23 seq5999 109 8e-19 seq1453 107 3e-18 >seq1386 Length=4420875 Score = 351 bits (388), Expect = 1e-91 Identities = 553/794 (70%), Gaps = 46/794 (6%) Strand=Plus/Plus Query 39448 TCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 39507 ||| ||||| || ||||| ||||| ||||||| |||||||| || ||||| || Sbjct 837342 TCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 837401 Query 39508 AACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTA-CGGCCTCTGTTATTATCG 39566 ||||| || |||||||| || ||||| | ||| || |||| | || | ||||| Sbjct 837402 CACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTAT-TCTAACTGCATTGACGATTATTT 837460 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 || | ||| || || ||| || | | ||||| ||||| | |||||| |||| Sbjct 837461 ATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGT 837520 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| ||||| ||||| ||||| | ||| || ||||||||||| || ||||| | Sbjct 837521 CACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCA 837580 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 |||| || ||||||||||| ||||| | |||||||| |||||||||||||| ||||| | Sbjct 837581 GACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCA 837640 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAAC-TTGTAT--------CATTATGT---- 39793 |||| ||||| || || | | ||||| | || ||| | ||||| || Sbjct 837641 CTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTGGA 837700 Query 39794 ------------AT-CCACTTCTGT-----------------GCCCAATCAGCTTTCTTC 39823 || || ||| ||| |||||||| || |||||| Sbjct 837701 GAACAATGGACAATGCCTCTT-TGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTC 837759 Query 39824 TTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTA 39883 ||||||||||||||||| || ||||| || |||||| | | |||| | ||||||| Sbjct 837760 TTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTA 837819 Query 39884 ACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGA 39943 | || || || || | |||||||||||||| |||||||||||||| || || || | Sbjct 837820 ATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGG 837879 Query 39944 AATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAA 40003 || || || ||||| | ||||| ||||| || || ||| | ||| | |||| Sbjct 837880 AAGCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTAAACCAAG 837939 Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||||||| ||||| |||||||| || ||||| || |||| ||||| ||| |||||| Sbjct 837940 TTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGCAAAATGAAATAT 837999 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 40123 | || || || ||| | ||||| | || || || || | || || |||||| Sbjct 838000 CTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCA 838059 Query 40124 GCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATT 40183 ||||||||||| || ||||| || || || ||||| | ||| |||||| | |||| || Sbjct 838060 GCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATA 838119 Query 40184 GGAAAAATAACAAA 40197 ||||| || ||||| Sbjct 838120 GGAAAGATGACAAA 838133 >seq7110 Length=16720443 Score = 306 bits (338), Expect = 5e-78 Identities = 650/972 (67%), Gaps = 49/972 (5%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT---TGTGACATAACTCCCATTT 39326 ||| |||||| |||| || | ||| ||| ||| || || ||||| |||||||| Sbjct 13122602 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTG-GACATCACTCCCATCC 13122544 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || || | ||||| | || ||||| || ||||||| ||| ||||| | Sbjct 13122543 TCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 13122484 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| ||||| | | | | || |||| || | || || | Sbjct 13122483 CCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCCGCATAA 13122424 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| ||||| || ||||| ||||| ||||||| |||||||| || ||||| | Sbjct 13122423 GTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCT 13122364 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | |||| || |||||||| || ||||| | ||| || || || | ||||| Sbjct 13122363 TCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTT 13122304 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 || | ||| || || ||| || | | ||||| ||||| | |||||| |||| Sbjct 13122303 ATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGT 13122244 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| ||||| ||||| ||||| | ||| || ||||||||||| || ||||| | Sbjct 13122243 CACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCA 13122184 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || |||||||| ||||| | |||||||| |||||||||||||| ||||| | Sbjct 13122183 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCA 13122124 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAAC-TTGTAT--------CATTATGT---- 39793 |||| ||||| || || | | ||||| | || ||| | ||||| || Sbjct 13122123 CTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTGGA 13122064 Query 39794 ------------AT-CCACTTCTGT-----------------GCCCAATCAGCTTTCTTC 39823 || || ||| ||| |||||||| || |||||| Sbjct 13122063 GAACAATGGACAATGCCTCTT-TGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTC 13122005 Query 39824 TTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTA 39883 ||||||||||||||||| || || || || |||||| | | |||| | ||||| | Sbjct 13122004 TTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTGA 13121945 Query 39884 ACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGA 39943 | || || || || | |||||||||||||| ||||| |||||||| || || || || Sbjct 13121944 ATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTTTCCATGGCAATTTGG 13121885 Query 39944 AATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAA 40003 || || || ||| | ||||| ||||| || || ||| | || | ||| ||| Sbjct 13121884 AAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCACTCCACCAGG 13121825 Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||||||| |||| || ||||| || ||| | || | || ||||| | | |||||| Sbjct 13121824 TTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACATGCGAAGTGAAATAT 13121765 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 40123 | | || || ||| | | || | || || || || | || || || ||| Sbjct 13121764 CTCTACTCAGGCTTCAGGGCTTCCTGGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCA 13121705 Query 40124 GCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATT 40183 || ||||| || || ||||| || || || |||| | ||| |||||||| |||| || Sbjct 13121704 GCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATATCACGGTATTCGATA 13121645 Query 40184 GGAAAAATAACA 40195 ||||| || ||| Sbjct 13121644 GGAAAGATGACA 13121633 >seq8888 Length=9016713 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || |||| Sbjct 1702276 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 1702335 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||| ||||| ||||| | Sbjct 1702336 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 1702395 Query 39759 CAAC 39762 | || Sbjct 1702396 CTAC 1702399 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || || || || | |||||||||||||| |||||||||||||| || || Sbjct 1704272 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 1704331 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 || || || || || ||||| | ||||| ||||| || || ||| Sbjct 1704332 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 1704377 >seq1508 Length=3848527 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 149384 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 149443 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 149444 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 149503 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 149504 TTTCTTATACCAT 149516 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| |||||||| || |||||| ||| | || || || ||||| || | Sbjct 147152 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 147211 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || |||||||| |||||||||||||| || || ||||| || | | | | Sbjct 147212 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 147271 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | ||||||| ||| || || | ||||| |||| Sbjct 147272 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 147322 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| |||| ||| |||||||| ||||| || || || | ||| || || ||||| | Sbjct 179966 CACCACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCGATCCTTGCTGCCA 180025 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| |||| ||||| | |||| Sbjct 180026 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAGAGTAT 180085 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| || || || | |||| ||||| || |||||||||| Sbjct 180086 CTAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 180136 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || || || ||||| || |||||||| || ||| Sbjct 166917 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 166976 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||||||| | || ||||| | ||||| || | | || | ||||||| Sbjct 166977 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATGCCCACAGATACCCTCATCAAC 167036 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 167037 ATATGCTGTGGTCTTTC 167053 >seq5999 Length=11637418 Score = 109 bits (120), Expect = 8e-19 Identities = 241/357 (68%), Gaps = 7/357 (2%) Strand=Plus/Minus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | || || || || |||||| | ||| ||||| | Sbjct 8324997 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 8324938 Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466 | || || | | |||| |||| | | || ||||| || |||| ||| ||| | || | Sbjct 8324937 TATTTCTGGGTGAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 8324878 Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526 || ||| || ||| ||| ||| | ||| | || | | ||| || ||||||||||| Sbjct 8324877 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACAACCATTTCCTCTATAATCTTC 8324818 Query 37527 ATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGAGC 37583 ||| | || || |||||||||| || |||| || ||| || || | ||||| Sbjct 8324817 ATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 8324758 Query 37584 TATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCT 37643 || ||| ||||| || || | || ||| |||| |||||||| | ||| | || Sbjct 8324757 TACTCTCCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTCA-CAA-GGGCT 8324700 Query 37644 TTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGGCA 37698 |||||| ||| | | || ||||| || || || |||| ||||| ||||||||| Sbjct 8324699 TTCTCCATAGGTGGTACTGTGTAATCATAGGCACTGTATAGGTCATAGCCCGCGGCA 8324643 >seq1453 Length=4135625 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| || ||||||||||| || || | || || Sbjct 1830590 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 1830531 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 1830530 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1830471 Query 39761 AC 39762 || Sbjct 1830470 AC 1830469 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 39428 AATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCA 39487 ||||| | |||||||| |||||| || || |||||||| || || |||||||| || Sbjct 1840867 AATCCAAGTTCTGAAAGCAATCTGTCAGCTACAAATTCAATATACTGTTTCATCAAAACA 1840808 Query 39488 CAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTC 39534 ||||||||||| ||||| |||||| | || || |||| |||||| Sbjct 1840807 CAATTCATTCCGATGAGGCCAACTGGCAAGGCTTCTGTTAAAAACTC 1840761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686816273384640