Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1386 194 1e-44 seq7110 176 4e-39 seq6555 138 9e-28 seq8888 107 2e-18 seq1153 100 2e-16 seq1453 86.0 5e-12 >seq1386 Length=4420875 Score = 194 bits (214), Expect = 1e-44 Identities = 424/633 (67%), Gaps = 54/633 (9%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| || |||| ||||| || ||||| ||||| || ||||| |||| Sbjct 838133 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 838074 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || ||||||||||| ||||| || || | | || ||| | ||||| ||| || Sbjct 838073 TCCTTTTGGACAGCTGAAGAGGTGGACCTTTCCAAGGACATTCAGCAC--TGGGAAGCCC 838016 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTG---GTTTTGGCGTTTTTTGCTGCGAGCG 43874 | || || | || | | |||| || |||| ||| |||| || ||||| || || | Sbjct 838015 TGAAGCCTGAGGAGAGATATTTCAT---TTTGCATGTTCTGGCTTTCTTTGCAGCAAGTG 837959 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAA 43933 | || ||||| |||||||| |||||| | |||| ||||||||||| |||| | ||| Sbjct 837958 ATGGCATAGTAAATGAAAACTTGGTTTAGCAGTTTAGCCAAGAAGTTCAGATTA-CGGAA 837900 Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 || | ||||| ||||| || | ||||||||| ||||| || ||||| |||||||| ||| Sbjct 837899 GCCTGTTGTTTCTATGGCTTCCTAATTGCCATGGAAAACATCCATTCTGAAATGTATAGT 837840 Query 43994 CTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA 44053 || || || || || ||||| |||||| | || | | | | || || || || Sbjct 837839 CTCCTCATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAACGCTATT 837780 Query 44054 GAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT----TAAAT---GGATAAA 44106 || ||| | ||| | || | || ||||| |||||| | | || ||| ||| Sbjct 837779 GAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATCGGGGACAAA 837720 Query 44107 ----------------TTC-------AAATG--ATTCTT----------TTGGAGAACGA 44131 ||| |||| ||| || ||||||||| Sbjct 837719 GAGGCATTGTCCATTGTTCTCCAACGTAATGGCATTGTTCTCCAACGTAATGGAGAACGT 837660 Query 44132 CTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTT 44191 | || || ||||| | |||||||| || |||||||| || || ||||| | ||||| Sbjct 837659 TTCGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTC 837600 Query 44192 TGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGT 44251 ||| | || ||||||||| ||||||| || | || ||||| ||||| | || || | Sbjct 837599 TGGCTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGA 837540 Query 44252 GATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || || || ||||| || || ||||| ||| || Sbjct 837539 GACGAGGGTTTACACTGTGACTTTGCCTGCCTG 837507 >seq7110 Length=16720443 Score = 176 bits (194), Expect = 4e-39 Identities = 609/940 (65%), Gaps = 69/940 (7%) Strand=Plus/Plus Query 43702 TGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTC 43761 |||| | ||||| || |||| | ||| || ||||| |||| || || || |||| || Sbjct 13121633 TGTCATCTTTCCTATCGAATACCGTGATATTTGGCAGATGTGTAAGAACGCTGAGGCTTC 13121692 Query 43762 ATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTA 43819 || ||||| || || || || || | | || ||| | ||||| | | || | Sbjct 13121693 CTTCTGGACGGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCACCAGGAA--GCCCTG 13121750 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || || | | | | |||| | || || || | || | ||| || || ||||| Sbjct 13121751 AAGCCTGAGTAGAGATATTTCACTTCGCATGTCCTGCCTTTCTCTGCAGCAAGTGACGGC 13121810 Query 43880 ATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCAC 43937 |||| |||||||| |||| ||| | || || ||||||||||| |||| | ||||| | Sbjct 13121811 GTAGTAAATGAAAACCTGGTGGAGTGGCTTAGC-CAAGAAGTTCAGATTA-CGGAAGCCC 13121868 Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997 | ||| ||||| || ||||||||||| ||||| || |||||||||||||| ||||| | Sbjct 13121869 ATTATTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCGGAAATGTATAGTCTCC 13121928 Query 43998 TGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAA 44057 | || || || ||||| ||||| | || | | | | || || || || || | Sbjct 13121929 TCATTGACACTTACATTCAAGATTCCAAAGAAAGGGAATTTCTCTTCAACGCCATTGAGA 13121988 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT----TAAAT---GGATAAA---- 44106 || | ||| | || | || ||||| |||||| | | || ||| ||| Sbjct 13121989 CAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATCGGGGACAAAGAGG 13122048 Query 44107 ------------TTC-------AAATG--ATTCTT----------TTGGAGAACGACTTG 44135 ||| |||| ||| || ||||||||| | | Sbjct 13122049 CATTGTCCATTGTTCTCCAACGTAATGGCATTGTTCTCCAACGTAATGGAGAACGTTTCG 13122108 Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195 | || ||||| | |||||||| || |||||||| || || ||||| | ||||| ||| Sbjct 13122109 TAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGC 13122168 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATG 44255 | ||||||||||| ||||||| || | || ||||| ||||| | || || | || | Sbjct 13122169 TCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGACG 13122228 Query 44256 AAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTT 44315 | || ||||| || || ||||| ||| || | | | | || | || | || |||| Sbjct 13122229 AGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCT--GCTAC-ACAAACCTT 13122285 Query 44316 CATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGA 44375 | ||| | | | | | || | || | ||||| | ||||||||| || || | | Sbjct 13122286 CGGAGCAGAGAGTCAAATAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCA 13122345 Query 44376 CAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATT 44434 | || | | || || | || || ||||| || || ||||||||| || || || Sbjct 13122346 CGGAGGCCCTGACAGTGAAGCTCATTGGGATGAATTGCAC-TTTGATGAAGCAGTACATC 13122404 Query 44435 GAATACATTGCAGATCGTTTACTTTT---GGAACTGGGTTGCGATAAACACTATATT--- 44488 |||| | | ||||| | |||| | ||| ||||||| | | || | || Sbjct 13122405 GAATTCGTGGCAGACAG---ACTTATGCGGGAGCTGGGTT----TTAGCAAGGTTTTCAG 13122457 Query 44489 -GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTT 44547 ||| |||| || ||||| |||||||| |||||||| ||||||| || || ||||| | Sbjct 13122458 AGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTC 13122517 Query 44548 TGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 ||| || | || || || |||||| | ||||| || ||| Sbjct 13122518 TGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATG 13122557 >seq6555 Length=10878593 Score = 138 bits (152), Expect = 9e-28 Identities = 180/248 (73%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| | || ||||||||| | ||| | ||| | || ||| | | Sbjct 1581271 CAGTGGTTTCATCAGTGTGCTACAGTTTTTAGGATTATATAAGAAAACTGGTAAATTGGT 1581330 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319 |||||| || || || |||| |||||||| |||| || |||||||| ||| | | | Sbjct 1581331 ATTTCTTGGATTGGATAATGTGGGAAAAACAACATTGCTACACATGCTAAAAGATGACGG 1581390 Query 47320 CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCAT 47379 | | | ||| ||| | |||||||| || || ||| ||||||| ||||||||||| Sbjct 1581391 ACTTGGACAACATGTCCCAATGTTACATCCTACTTCAGAAGAACTAACCATTGCTGGCAT 1581450 Query 47380 AACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTA 47439 || |||| || |||||| | || |||||| ||||||| || ||| ||||| |||| || Sbjct 1581451 GACCTTTACAACTTTTGATCTGGGTGGACACGTTCAAGCTCGAAGAGTGTGGAAAAACTA 1581510 Query 47440 TTTTCATG 47447 ||| || Sbjct 1581511 CCTTCCTG 1581518 >seq8888 Length=9016713 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct 1704388 CGGTTTAGCCAAGAAGTTCAGATTACG-GAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 1704330 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 1704329 CATGGAAAACATCCATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 1704272 >seq1153 Length=5201046 Score = 100 bits (110), Expect = 2e-16 Identities = 233/346 (67%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 77341 GTCCAGCTTCATAAAGTCATCCTTGTTGA-CAACTGACCCTCCGCCATGCAG--CCTCCA 77397 |||||| | || ||||| || ||||||| || || ||| | | ||| |||||| Sbjct 536469 GTCCAGTTCCACGAAGTCCTCTTTGTTGATCACCT---CCTTCCCTGTGCTTGTCCTCCA 536525 Query 77398 GCCGTTCTGCTTCCAGTTCTTA-ACCCACTTAGTCACACCATTGATGGTGAACATGCTGT 77456 || |||| ||||||| |||| ||||| ||||| | |||||||| || |||||||||| Sbjct 536526 TCCATTCTTCTTCCAGA-CTTACACCCAATTAGTGATGCCATTGATAGTAAACATGCTGT 536584 Query 77457 CTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATG 77516 | ||||||| |||| ||| |||| || | ||| ||||||| | |||||| | Sbjct 536585 CCGTGTAGAGAACCAACTTACTGATGTTCTGAGCCTTCGCTTGTTCGATGGCTTTGCAGA 536644 Query 77517 CAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAA 77576 | || || || || || | |||||||| ||| ||| ||||| | | ||||| | Sbjct 536645 CTGCATGAATCTCTGCTCTTTGGTTTGTTTGTCACCCAGGAAGTCTAATTCCTACATTTA 536704 Query 77577 GCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTG 77636 | || ||||| || || || || || ||||| || |||| || || Sbjct 536705 AACGATGGCCTGGCCCCCAGTAAACACCGATTCCTGCTCGAGCCCCCCTCTGCCCATTAC 536764 Query 77637 ATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGTA 77682 |||| |||||||| ||||||| | || | || ||||| || Sbjct 536765 TGGAGCAGCAGCCGTCCTTGTAGACGATGACAGTTTCCCCCATATA 536810 >seq1453 Length=4135625 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 1844723 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 1844782 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 1844783 AACGAGTTTCAGAGTATCAGCG 1844804 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||| | |||||||| Sbjct 1822639 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCA 1822698 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 1822699 TCCTTCTGGACAGCAGAAGAGGT 1822721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397403801109880