Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq6777 84.2 2e-11 seq2230 84.2 2e-11 >seq6777 Length=13026147 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||||||||| |||||||| ||||| || ||| || || ||||| || |||||| Sbjct 785388 CCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACA 785329 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAG 111881 || |||||||| ||||| || || || | ||||| || || || Sbjct 785328 CCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAG 785285 >seq2230 Length=20112346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 241/367 (66%), Gaps = 3/367 (1%) Strand=Plus/Plus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCA 111621 ||| ||| | ||||| || |||| ||||| || || || || |||| | |||||| Sbjct 11223006 AAACAGCCATTTCCATTTTAATAGTGGGATGGGGACTGTAGC-CTTCAATCTGAAAGTCT 11223064 Query 111622 TCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGG 111681 ||||| || || | || ||||| ||| ||||| || ||||| || || Sbjct 11223065 TCAGCCTTGAAGTCATAGATTTTCTCAACTTTTCCAAGGATTTTGAGCTTTGGGAAAGGC 11223124 Query 111682 GTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCA 111741 | || | || |||||| | || | ||| ||||||| | |||| || ||| Sbjct 11223125 CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGTAAATGTGTGCA 11223184 Query 111742 TCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTAT 111801 ||||| | | || | | || | |||| || || ||||||||||| |||||||| Sbjct 11223185 TCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCGATCATGTAG 11223244 Query 111802 GTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTT 111861 ||||| || || || || | ||| || | |||||| |||||| | ||||| || || Sbjct 11223245 GTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACCTC 11223304 Query 111862 TGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAA 111921 || || ||||| || || || | || | ||| || || || ||||| |||| || Sbjct 11223305 TGGTACAGCTG-CAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAAAGGGCATGGCAC 11223363 Query 111922 GGAGGCA 111928 | |||| Sbjct 11223364 AGGGGCA 11223370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391894124804488