Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1386 95.1 1e-14 seq8888 93.3 5e-14 seq7110 91.5 2e-13 >seq1386 Length=4420875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038 ||||| || |||| ||||| ||| ||||||||||||||||| ||||| || || | Sbjct 837664 AACGTTTCGTAGCCTTTGC-TGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCG 837606 Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 || |||||||||||||| || || || ||||| ||||| | || ||||| || || ||| Sbjct 837605 ATATTCTGGCTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATT 837546 Query 60099 TCCCGGGACGAGGG 60112 | | |||||||| Sbjct 837545 AGCAGAGACGAGGG 837532 >seq8888 Length=9016713 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038 ||||| || |||| ||||| ||| ||||||||||||||||| ||||| || || | Sbjct 1702407 AACGTGTCGTAGCCTTTGC-TGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCG 1702349 Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 || |||||||||||||| || || || ||||| ||||| | || ||||| || || ||| Sbjct 1702348 ATATTCTGGCTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATT 1702289 Query 60099 TCCCGGGACGAGG 60111 | | ||||||| Sbjct 1702288 AGCAGAGACGAGG 1702276 >seq7110 Length=16720443 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 59980 AACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038 ||||| || |||| ||||| ||| ||||||||||||||||| ||||| || || | Sbjct 13122100 AACGTTTCGTAGCCTTTGC-TGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCG 13122158 Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 || ||||||||||| || || || || ||||| ||||| | || ||||| || || ||| Sbjct 13122159 ATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATT 13122218 Query 60099 TCCCGGGACGAGGG 60112 | | |||||||| Sbjct 13122219 AGCAGAGACGAGGG 13122232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548450913709440