Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq2674 118 1e-21 seq897 98.7 1e-15 >seq2674 Length=18718125 Score = 118 bits (130), Expect = 1e-21 Identities = 193/274 (70%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCC 14336 ||||| |||||||| |||||| | || |||||||| | ||||| || || | ||| Sbjct 13378292 GACACATACAGCCCGGACGAGTATCTCTGGGCCACTATTCAGAGGATCCCCGA-AGTCCC 13378350 Query 14337 GGGGGGATCCCCGTTC--ACGTCA--AGTACGACACCTCGGACATGTGGGCCAAGGTCAG 14392 ||| || | || | | | || ||||||||| || |||||| || | | ||| Sbjct 13378351 AGGG---TCACTGTCCTTAAGCCATAAGTACGACATGTCCGACATGCACGCGATTGCCAG 13378407 Query 14393 GTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTG 14452 ||| ||||||||||| |||| || || || || || || |||| |||||||| || Sbjct 13378408 GTTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGCGCCCCCTACCCGCCGTG 13378467 Query 14453 CGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAA 14512 |||| ||||||| | | | | ||| | ||||| | || ||| |||| ||| || Sbjct 13378468 TAGCGGCGTCCACGTGCGCTCTGTGTGCGTTTTCGGAGCGGGTGACTTGAACTGGATGTT 13378527 Query 14513 GAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 | |||| | ||| |||||||||||||||||||| Sbjct 13378528 GCGCGTGCACCACTTGTTCGCCAACAAGTTCGAC 13378561 >seq897 Length=37111980 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/264 (68%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || |||||| |||||| | || || |||||||||||||| | ||| |||| | ||| Sbjct 28905960 CCACTGAGCAGAGAAGAGTTAGACTTCCCCATCGCCTACTCTGTGGTGGTCCATGAGAAG 28906019 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || || | ||||| || || ||| | || | || ||||| |||||| | ||||||||| Sbjct 28906020 ATTGAAAACTTCGAACGGCTGCTGCGAGCTGTGTATGCCCCTCAGAACATATACTGCGTC 28906079 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 || ||||| |||||| || |||| || ||| ||||||| ||| Sbjct 28906080 CATGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAGGCCATCATTTCCTGC 28906139 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||||| ||||| | ||||| | || | ||||| |||| ||||||| | Sbjct 28906140 TTCCCAAACGTCTTCATGGCCAGTAAGTTGGTCCGGGTGGTTTACGCCTCCTGGTCCAGG 28906199 Query 13911 GTGCAGGCCGACCTCAGCTGCATG 13934 |||||||| ||||| | ||| ||| Sbjct 28906200 GTGCAGGCTGACCTGAACTGTATG 28906223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658650467829760