Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq780 334 6e-87 seq2230 194 1e-44 seq6777 149 5e-31 seq1064 102 7e-17 seq4113 100 2e-16 >seq780 Length=6765806 Score = 334 bits (370), Expect = 6e-87 Identities = 487/688 (71%), Gaps = 5/688 (1%) Strand=Plus/Minus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 |||| || || || || || | || |||||| | |||||||| || | || || ||||| Sbjct 32484 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCGGCTCAATGTGATTCAGGT 32425 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | ||| || ||||||| |||| ||||| || || || | || || |||||||| | Sbjct 32424 AAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGACGTGTG 32365 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||||| | || | ||||||||||||||| ||||| || || || ||||||| Sbjct 32364 CGATCATGTA-----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGT 32310 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 | || ||| ||||||| ||||| || || ||||| || | |||||| ||||| || | Sbjct 32309 CTCCTGACATCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACGTAGAACTGGCAAA 32250 Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30137 |||||||||||| || || |||||||| | ||||| || ||||| || |||| || Sbjct 32249 GGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGA 32190 Query 30138 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30197 |||| | ||||| || |||||| | |||| ||| | |||||||| ||||| | Sbjct 32189 TGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTA 32130 Query 30198 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30257 | || | || || |||| ||| || |||| || || || ||||||||||||| Sbjct 32129 CTCCTTGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACT 32070 Query 30258 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30317 | || || || || || || | || || ||| | ||| ||| ||| |||||| Sbjct 32069 GAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCA 32010 Query 30318 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGG 30377 | ||||||| ||| || ||||| |||||||| || || ||||| ||| ||||| || | Sbjct 32009 AGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAG 31950 Query 30378 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 30437 ||||||||| || ||| |||||||||| ||||||| || |||| || || || | Sbjct 31949 CGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACAC 31890 Query 30438 TCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACA 30497 ||||| || || || ||||| | | | |||| ||| | ||||| || |||| Sbjct 31889 GTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACA 31830 Query 30498 CGGACAAGACTCCCGTGCCCGTCCTGTC 30525 | |||| | || ||||| || | ||| Sbjct 31829 CCGACAGGGTGCCGGTGCCTGTGCGGTC 31802 >seq2230 Length=20112346 Score = 194 bits (214), Expect = 1e-44 Identities = 392/577 (68%), Gaps = 11/577 (2%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| || || || | || ||||| | |||||| | || | || |||||||| Sbjct 11223115 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 11223173 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | ||| || ||||||| |||| ||| | || || || | || || |||| ||| | Sbjct 11223174 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 11223233 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||||| ||||| || | |||||||||| ||| |||| || || || ||| ||| Sbjct 11223234 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 11223293 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 | || ||||||||||| ||||| || || ||||| || |||||| || || || | Sbjct 11223294 CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAAA 11223352 Query 30078 TGGCGTGGCACGGAGGAAG-------AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 30130 ||| |||||| | || || | ||||| | ||||| | ||||| || Sbjct 11223353 GGGCATGGCACAGGGGCAGGGTGGCAGGGTATGAGAGGAAGATCTTT-TGATTCCAAGCA 11223411 Query 30131 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGC 30190 || | ||||| | |||||||| |||||| | |||| ||| | | |||||||| Sbjct 11223412 CATAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCACCTTTTGCAGT 11223471 Query 30191 TGATCCACCCCCATCCCCGAGTA-GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATG 30249 || || || || | || || | | || || |||| || || | ||| | Sbjct 11223472 TGGTCTACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAGG 11223531 Query 30250 CCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCT 30309 ||||||||| || | || || || || | || || ||||| ||| || || Sbjct 11223532 CCTCCACTGAAAGCTATAAACTGGGCCTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAG 11223591 Query 30310 CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAG 30369 ||||||| ||||||| ||| |||| ||| |||||||| || || ||||| ||| || Sbjct 11223592 GCTGTCCAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAG 11223651 Query 30370 CTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30406 ||| || | |||||||| || ||| ||||||||| Sbjct 11223652 CTCCTTAGCATTTGTGGAGCCCTTGATCAACCACAGC 11223688 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 19442194 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 19442135 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || || |||||||| ||||||| ||||| || ||| Sbjct 19442134 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 19442087 >seq6777 Length=13026147 Score = 149 bits (164), Expect = 5e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 785391 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 785332 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || ||||||||| | ||||| || || ||||| |||| | Sbjct 785331 ACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACC 785272 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 ||||| ||||| || | |||||||||||| || || ||||||||| Sbjct 785271 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGG 785227 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || |||||||||||||| || || || || || || | || Sbjct 782138 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 782079 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 782078 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 782019 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| ||||| || | ||||||||| || Sbjct 782018 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 781971 >seq1064 Length=6047857 Score = 102 bits (112), Expect = 7e-17 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 2122611 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 2122552 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | || || |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 2122551 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 2122492 Query 110499 CTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 110530 ||| || || |||| ||||||| || | ||||| Sbjct 2122491 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 2122460 >seq4113 Length=38937830 Score = 100 bits (110), Expect = 2e-16 Identities = 179/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 13965542 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 13965601 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| || || |||||||| |||||| || Sbjct 13965602 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCATGTTTTCCTACCCATAATCACCGAATT 13965661 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558 ||| || ||| |||||||| || | ||||| | | || | | | || || | Sbjct 13965662 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATTCCT 13965721 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 110617 || || |||| ||||| || ||||| || || ||||||||| ||||| || Sbjct 13965722 GAG------CGGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GACA 13965774 Query 110618 CGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 13965775 CAGCAACGATGCAGTTTAG 13965793 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 110381 GAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCA 110440 ||||||| || || || || || || || |||| |||| || || ||||| || | Sbjct 25459110 GAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTAATGAGAACTATATTAATTCTGTCCCTTA 25459169 Query 110441 GAGGTCTATTCTTTTCGGGGATG----GAGAACCAAGTCTTTCTACCCATTATCACCACG 110496 ||||| |||||| || || ||| |||||||| || || |||||||| ||||||| Sbjct 25459170 AAGGTCGATTCTTCTCTGGAATGAATGGAGAACCAGGTTTTCCTACCCATAATCACCAAA 25459229 Query 110497 TTCTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 110530 ||||| || || |||| ||||||| || | ||||| Sbjct 25459230 TTCTGTTTACCTTCTG-CTGAAGAGGTTGTGGTCA 25459263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406257038239392