Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5555 125 4e-24 seq8555 91.5 9e-14 seq3672 87.8 1e-12 seq920 87.8 1e-12 >seq5555 Length=11985078 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| ||| |||||| ||| || || ||||| || || || Sbjct 7696494 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7696553 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||| |||||||| || || | ||| ||||| || || Sbjct 7696554 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7696613 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7696614 ATGCCCTCCTTGTCTTGGATC-TTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 7696672 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || |||||||| || || ||||| || |||||||| Sbjct 7696673 CTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7696720 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| ||| |||||| ||| || || ||||| || || || Sbjct 7696722 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7696781 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||| |||||||| || || | ||| ||||| || || Sbjct 7696782 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7696841 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7696842 ATGCCCTCCTTGTCTTGGATC-TTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 7696900 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || |||||||| || || ||||| || |||||||| Sbjct 7696901 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7696948 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| ||| |||||| ||| || || ||||| || || || Sbjct 7696950 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7697009 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||| |||||||| || || | ||| ||||| || || Sbjct 7697010 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7697069 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7697070 ATGCCCTCCTTGTCTTGGATC-TTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 7697128 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || |||||||| || || ||||| || |||||||| Sbjct 7697129 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7697176 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| ||| |||||| ||| || || ||||| || || || Sbjct 7697178 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7697237 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||| |||||||| || || | ||| ||||| || || Sbjct 7697238 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7697297 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7697298 ATGCCCTCCTTGTCTTGGATC-TTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 7697356 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || |||||||| || || ||||| || |||||||| Sbjct 7697357 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7697404 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| ||| |||||| ||| || || ||||| || || || Sbjct 7697406 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7697465 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||| |||||||| || || | ||| ||||| || || Sbjct 7697466 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7697525 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7697526 ATGCCCTCCTTGTCTTGGATC-TTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 7697584 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || |||||||| || || ||||| || |||||||| Sbjct 7697585 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7697632 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| ||| |||||| ||| || || ||||| || || || Sbjct 7697634 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7697693 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||| |||||||| || || | ||| ||||| || || Sbjct 7697694 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7697753 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7697754 ATGCCCTCCTTGTCTTGGATC-TTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 7697812 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || |||||||| || || ||||| || |||||||| Sbjct 7697813 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7697860 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| ||| |||||| ||| || || ||||| || || || Sbjct 7697862 CCACCTCTGAGGCGGAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7697921 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||| |||||||| || || | ||| ||||| || || Sbjct 7697922 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 7697981 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7697982 ATGCCCTCCTTGTCTTGGATC-TTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 7698040 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || |||||||| || || ||||| || |||||||| Sbjct 7698041 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7698088 Score = 116 bits (128), Expect = 2e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 |||| |||| || |||||| ||| || || ||||| || || || || || ||| | Sbjct 7696278 CGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 7696337 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| || ||||| |||||||| || || | ||| ||||| || || | ||||||||| Sbjct 7696338 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 7696397 Query 34612 TCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 ||| |||| || | || ||| | || ||||| | |||||| |||| ||| || Sbjct 7696398 TCTTGGATC-TTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 7696456 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| || || ||||| || |||||||| Sbjct 7696457 GGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 7696492 >seq8555 Length=10321147 Score = 91.5 bits (100), Expect = 9e-14 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||| | |||||| | ||| |||||| ||||||||||||||| || || | Sbjct 2780804 CGCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 2780863 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || | ||||| ||||| || |||||||| || | | || ||||| || | Sbjct 2780864 ACAAAGTACGTCCATCTTCTAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCAGGAG 2780923 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT 34622 | | ||| |||||||| |||||| Sbjct 2780924 GAATTCCTTCCTTGTCCTGGATCTT 2780948 >seq3672 Length=15443579 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | |||||| | ||| |||||| ||||||||||||||| || || || Sbjct 13644567 CCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGAC 13644508 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| ||||| || || ||||| || | | || ||||| || || Sbjct 13644507 AAAGTACGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 13644448 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| |||||||| |||||| |||| | ||||| || | || || Sbjct 13644447 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACC 13644388 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || || || || || | || ||||| ||||||||||| ||| Sbjct 13644387 TCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATTG 13644337 >seq920 Length=9572204 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | |||||| | ||| |||||| ||||||||||||||| || || || Sbjct 2426397 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2426456 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| ||||| || || ||||| || | | || ||||| || || Sbjct 2426457 AAAGTACGTCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 2426516 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| |||||||| |||||| |||| | |||| ||| | || || Sbjct 2426517 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTCGACC 2426576 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || || || || || | || ||||| ||||||||||| ||| Sbjct 2426577 TCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATTG 2426627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314688265774808