Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq780 329 3e-85 seq2230 188 6e-43 seq6777 161 8e-35 seq1064 98.7 8e-16 seq4113 96.9 3e-15 >seq780 Length=6765806 Score = 329 bits (364), Expect = 3e-85 Identities = 530/770 (69%), Gaps = 5/770 (1%) Strand=Plus/Minus Query 29528 GGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 29587 |||||||| | |||||| || | || || || ||||| ||||| || | |||| Sbjct 32566 GGGTGAGGATTGTAGCCTTCAATCTGAAAGTCTTCAGCCTTGAAGTCATCAATTTTCTCA 32507 Query 29588 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTC 29647 || | | || || || |||| || || || || || | || |||||||| || Sbjct 32506 ACTTTTCGAAGGATTCTGAGCTTGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTC 32447 Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || | ||| | ||||| | ||| |||||||||| ||||| ||||| || || Sbjct 32446 AGCGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCT 32387 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | || || |||||||| || |||||||| | || | ||||||||||||||| Sbjct 32386 GGCTTCAGGCCCGTGACGTGTGCGATCATGTA-----GCAGGGCGTAGCTGGCGATGTTG 32332 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 |||||||| || || |||||||| |||||| ||||||| |||||||| || ||||| || Sbjct 32331 AAGGGCACACCCAGGCCCATGTCTCCTGACATCTGGTACAGCTGGCAGGACAGCTCACCA 32272 Query 29828 TCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887 | |||||| ||||| || | ||| |||||||| || |||||||||||| | ||| Sbjct 32271 TTCACCACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCT 32212 Query 29888 TTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 29947 || || ||||| ||||||| |||||| | ||||| || |||||| | |||| ||| Sbjct 32211 TTTGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCA 32152 Query 29948 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNN 30007 | |||||||| ||||| || || | || || |||| Sbjct 32151 GTCACTTTTTGCAGTTGATCTACTCCTTGATCTGAATAATCTGAATCCATATCTTTGTAT 32092 Query 30008 NNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30067 | |||||||||||||| || || || || || || | || || ||| | ||| Sbjct 32091 TCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTG 32032 Query 30068 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30127 ||| ||| ||||||| ||||||| ||| || ||||| |||||||| || || Sbjct 32031 GTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACT 31972 Query 30128 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30187 ||||| || ||||| || | ||||||||| || ||| |||||||||| ||||||| Sbjct 31971 CCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCC 31912 Query 30188 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCG 30247 || |||| || || || | ||||| || || || ||||| | | | |||| | Sbjct 31911 GAAACACCCTTGCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTG 31852 Query 30248 TACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297 || | |||||| || |||| |||| | || |||||||| | ||| Sbjct 31851 TAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCTGTGCGGTC 31802 >seq2230 Length=20112346 Score = 188 bits (208), Expect = 6e-43 Identities = 386/577 (67%), Gaps = 11/577 (2%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| || || || | || ||||| || ||||| | || | ||| || |||| Sbjct 11223115 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 11223173 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | ||| |||||||||| ||||| ||| | || || || | || || |||| ||| | Sbjct 11223174 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 11223233 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | |||||||| ||||| || | |||||||||| ||| |||| ||| || || ||| ||| Sbjct 11223234 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 11223293 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849 | |||||||||||||| |||| ||| || ||||| || |||||| || || || | Sbjct 11223294 CTCCTGACCTCTGGTACAGCT-GCAGGACAGCTCATGGTTCACCACGTAGAAGTGGCAAA 11223352 Query 29850 TGGCATGGCACGGAGGAAG-------GGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCA 29902 |||||||||| | || || || |||||| | ||||| | ||||| ||| Sbjct 11223353 GGGCATGGCACAGGGGCAGGGTGGCAGGGTATGAGAGGAAGATCTTT-TGATTCCAAGCA 11223411 Query 29903 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGC 29962 || | ||||| | |||||||| |||||| | |||| ||| | | |||||||| Sbjct 11223412 CATAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCACCTTTTGCAGT 11223471 Query 29963 TGATCCACCCCCATCCCCGAGTA-GTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATG 30021 || || || || | || || | | | ||| | Sbjct 11223472 TGGTCTACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAGG 11223531 Query 30022 CCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCT 30081 ||||||||| || | || || || || | || || ||||| ||| || || Sbjct 11223532 CCTCCACTGAAAGCTATAAACTGGGCCTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAG 11223591 Query 30082 CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAG 30141 ||||||| ||||||| ||| |||| ||| |||||||| || || ||||| || || Sbjct 11223592 GCTGTCCAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAG 11223651 Query 30142 CTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30178 ||| || | |||||||| || ||| ||||||||| Sbjct 11223652 CTCCTTAGCATTTGTGGAGCCCTTGATCAACCACAGC 11223688 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 19442194 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 19442135 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || |||||||| ||||||| ||||| |||||| Sbjct 19442134 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 19442087 >seq6777 Length=13026147 Score = 161 bits (178), Expect = 8e-35 Identities = 134/164 (82%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 785391 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 785332 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| |||||||||||| | |||||||| || ||||| |||| | Sbjct 785331 ACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACC 785272 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| ||||| || | ||| |||||||| || ||||||||||| Sbjct 785271 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAG 785228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||||||||||||| || || || || || || | || || ||| | ||| ||| Sbjct 782116 AAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAAT 782057 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||||||| ||| || ||||| |||||||| || || ||||| Sbjct 782056 CCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 781997 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| || | ||||||||| || Sbjct 781996 GACAGCTCCTTAGCGTTTGTGGATCC 781971 >seq1064 Length=6047857 Score = 98.7 bits (108), Expect = 8e-16 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | ||||| | Sbjct 2122611 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 2122552 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | || || |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 2122551 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 2122492 Query 114382 CTGCTTACC-TCTGTCGGAAGACGTAGCGGTCA 114413 ||| ||||| |||| | ||||| || | ||||| Sbjct 2122491 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 2122460 >seq4113 Length=38937830 Score = 96.9 bits (106), Expect = 3e-15 Identities = 178/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | ||||| | Sbjct 13965542 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 13965601 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| || || |||||||| |||||| || Sbjct 13965602 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCATGTTTTCCTACCCATAATCACCGAATT 13965661 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441 ||| |||||| | ||||| || | ||||| | | || | | | || || Sbjct 13965662 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATT--- 13965718 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 114500 || | ||| |||| ||||| || ||||| || || ||||||||| ||||| || Sbjct 13965719 ---CCTGAGCGGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GACA 13965774 Query 114501 CTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 13965775 CAGCAACGATGCAGTTTAG 13965793 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/155 (73%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 114264 GAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCA 114323 ||||||| || || || || || || || |||| |||| || | ||||| || | Sbjct 25459110 GAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTAATGAGAACTATATTAATTCTGTCCCTTA 25459169 Query 114324 GAGGTCTATTCTTTTCGGGGATG----GAGAACCAAGTCTTTCTACCCATTATCACCACG 114379 ||||| |||||| || || ||| |||||||| || || |||||||| ||||||| Sbjct 25459170 AAGGTCGATTCTTCTCTGGAATGAATGGAGAACCAGGTTTTCCTACCCATAATCACCAAA 25459229 Query 114380 TTCTGCTTACC-TCTGTCGGAAGACGTAGCGGTCA 114413 ||||| ||||| |||| | ||||| || | ||||| Sbjct 25459230 TTCTGTTTACCTTCTG-CTGAAGAGGTTGTGGTCA 25459263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406109857571536