Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1386 266 3e-66 seq7110 221 1e-52 seq5999 132 4e-26 seq897 120 3e-22 seq8888 113 4e-20 seq5777 113 4e-20 seq6666 104 2e-17 seq1453 98.7 8e-16 >seq1386 Length=4420875 Score = 266 bits (294), Expect = 3e-66 Identities = 533/796 (67%), Gaps = 47/796 (6%) Strand=Plus/Plus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || || ||||| || ||||| |||| | ||| || || ||||| | | Sbjct 837342 TCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 837401 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 ||| || || || | || | ||||| |||||||| | || || | |||||| | Sbjct 837402 CACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATTATTTA 837461 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 ||| | | | | | || ||||| | || | || | |||| | || ||||| || Sbjct 837462 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTC 837521 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 ||| || ||||| |||||||||||||| ||||| || ||||| || | |||||||| | Sbjct 837522 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAG 837581 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 ||||| ||||| ||||| ||||| | ||||| || ||||||||||| || ||||| || Sbjct 837582 ACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 837641 Query 4679 GGCGGCAAACGCTACTAATCGGGACCC-----------GAACGA---------GCTGG-- 4716 || ||||| ||||| || || || |||| | | ||| Sbjct 837642 TGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTGGAG 837701 Query 4717 -----------------CTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTT 4759 ||||||| ||||| || ||||| | || || ||||| Sbjct 837702 AACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTT 837761 Query 4760 AACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGG-TCTT 4815 || || || ||||| | |||||||| || | ||| |||| || ||| |||| Sbjct 837762 TACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTT----TGGAATCTT 837817 Query 4816 GAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCT 4875 ||| |||||||| || || || ||||||||||||||||| || ||||| || ||||| Sbjct 837818 TAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTA 837877 Query 4876 GAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTA 4935 | || || || || || | ||||| || | |||||||| | | ||| | || | Sbjct 837878 GGAAGCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTAAACCA 837937 Query 4936 AGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGT 4995 ||||||| |||||||| || ||||| |||||||| || |||| |||||| | || || | Sbjct 837938 AGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGCAAAATGAAAT 837997 Query 4996 ACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTT 5055 | || |||||||| || || |||||| | | || || | | || || |||| Sbjct 837998 ATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTT 838057 Query 5056 CAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAA 5115 || | |||||||| || || || ||||| || ||||| |||||||||| | || | | Sbjct 838058 CAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGA 838117 Query 5116 TCGGAAGTATGACAAA 5131 | |||| |||||||| Sbjct 838118 TAGGAAAGATGACAAA 838133 >seq7110 Length=16720443 Score = 221 bits (244), Expect = 1e-52 Identities = 599/917 (65%), Gaps = 55/917 (6%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| ||||| ||| || |||| ||||| || ||||| | |||||||| ||| Sbjct 13122541 TGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCC 13122482 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTT-TCACACTTTAGAGCTACA--AGC 4376 ||||| ||||| ||||| | | || || || | | || |||| | | Sbjct 13122481 ATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCC---AGCTCCCGCATA 13122425 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | || ||| || || ||||| || ||||| |||| | ||| || || ||||| | Sbjct 13122424 AGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGC 13122365 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 |||| | || || | || | ||||| |||||||| | || || | |||||| Sbjct 13122364 TTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATT 13122305 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA 4556 | ||| | | | | | || ||||| | || | || | |||| | || ||||| Sbjct 13122304 TATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAG 13122245 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 ||||| || ||||| |||||||||||||| ||||| || ||||| || | |||||||| Sbjct 13122244 TCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATC 13122185 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 | |||| || || ||||| ||||| | ||||| || ||||||||||| || ||||| Sbjct 13122184 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCC 13122125 Query 4677 ACGGCGGCAAACGCTACTAATCGGGACCC-----------GAACGA---------GCTGG 4716 || || ||||| ||||| || || || |||| | | ||| Sbjct 13122124 ACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGTTGG 13122065 Query 4717 -------------------CTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTC 4757 ||||||| ||||| || ||||| | || || ||| Sbjct 13122064 AGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTC 13122005 Query 4758 TTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGG-TC 4813 || || || || ||||| | || ||||| || | ||| |||| || ||| || Sbjct 13122004 TTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTTTCTT----TGGAATC 13121949 Query 4814 TTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAAT 4873 |||||| |||||||| || || || ||||||||||| |||||||| ||||| || ||||| Sbjct 13121948 TTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTTTCCATGGCAAT 13121889 Query 4874 CTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTAC 4933 || || || || || | ||||| || | |||||||| | | || | || || Sbjct 13121888 TTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCACTCCAC 13121829 Query 4934 TAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAA 4993 | |||||| ||||||| |||||||| |||||| | || | || ||||| || | || Sbjct 13121828 CAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACATGCGAAGTGAA 13121769 Query 4994 GTA-CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTT 5052 || || | | |||||||| || || | ||| | | || || | | || || | Sbjct 13121768 ATATCTCTAC-TCAGGCTTCAGGGCTTCCTGGTGCTGAATGTCCTTGGAAAGGTCCACCT 13121710 Query 5053 CTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACT 5112 | ||| | ||||| || || || || || || || |||| |||||||||| | || | Sbjct 13121709 CCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATATCACGGTATT 13121650 Query 5113 GAATCGGAAGTATGACA 5129 || |||| |||||| Sbjct 13121649 CGATAGGAAAGATGACA 13121633 >seq5999 Length=11637418 Score = 132 bits (146), Expect = 4e-26 Identities = 276/407 (68%), Gaps = 7/407 (2%) Strand=Plus/Plus Query 31667 CTATCTGAACATGCTACGGTTCCTACAAAAGGATCAGAGGGTTCTGCGGGATATGATTTA 31726 || || || ||||| || | ||| || | || || ||| || | ||||| ||||| || Sbjct 8324602 CTTTCGGAGCATGCCACCGCTCCGACCAGGGGGTCCGAGCGTGCCGCGGGCTATGACCTA 8324661 Query 31727 TATAGCGCCTACGACTATGTGGTAGAGGCAAAATCTAGAGCGCTAGTTAAAACCGATATT 31786 || || ||||| || || ||| | | | ||| || || ||||| || ||| Sbjct 8324662 TACAGTGCCTATGATTACACAGTACCACCTATGGAGAAAGCCCTTGTGAAAACAGACATT 8324721 Query 31787 CAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTT 31846 || || || | ||||| |||||||| || || ||||||| | ||||| ||||| | Sbjct 8324722 CAGATAGCTCTTCCTTCTGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCA 8324781 Query 31847 AAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGA 31906 |||||||| || || || || || ||||| | |||| ||| ||||||||||| | | | Sbjct 8324782 AAACACTTCATAGATGTAGGAGCTGGTGTCACAGATGAAGATTATAGAGGAAATGGTTGT 8324841 Query 31907 ATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAAAAGGGCGATAGGGTA 31963 |||| ||||||||||||| |||||| | | || | |||||||| ||| | | Sbjct 8324842 GTTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG--TCAAAAAGGGTGATCGAATT 8324898 Query 31964 GCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAAGTAGCTAATTATCTAGAT 32023 || || || ||||| ||| ||| || ||||||| | || | | | ||||| Sbjct 8324899 GCACAGCTCATTTGTGAACGGATATTTCACCCAGAAATAGAGGAAGTTCAAGTTTTAGAT 8324958 Query 32024 TGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGGAAATTAATT 32070 ||| |||| || | ||| ||||| || || ||||| ||||| Sbjct 8324959 GACACTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAAA-TAATT 8325004 >seq897 Length=37111980 Score = 120 bits (132), Expect = 3e-22 Identities = 158/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 |||||||| || || || || | ||||| |||||||| || || ||||| | | ||| Sbjct 4541765 AAAACCGACATCCAGATAGCTCTTCCTTCTGGGTGCTATGGGAGAGTAGCTGCGCGTTCT 4541824 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || ||||| | |||||||| || || || || || ||||| |||||| ||| || ||| Sbjct 4541825 GGTTTGGCTGCAAAACACTTCATAGATGTAGGAGCCGGTGTCATAGATGAAGATTACAGA 4541884 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAAAAG 31951 ||||||||||| ||||| ||||||||| ||| |||||| | | || | |||||| Sbjct 4541885 GGAAACGTTGGTATTGTACTGTTTAATTCTGGCAAAGAAAAGT-TTGAAG--TCAAAAAG 4541941 Query 31952 GGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATA 31987 | ||| | | || || || ||||| ||| | ||| Sbjct 4541942 TGTGATCGAATTGCACATCTCATTTGTGAACAGATA 4541977 >seq8888 Length=9016713 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || ||||| || | |||||||| | ||||| ||||| Sbjct 1702278 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 1702337 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 1702338 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 1702397 Query 4692 AC 4693 || Sbjct 1702398 AC 1702399 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || ||||||||||||||||| || ||||| || ||| Sbjct 1704273 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCA 1704332 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | ||||| || | |||||||| Sbjct 1704333 ATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTC 1704376 >seq5777 Length=11815299 Score = 113 bits (124), Expect = 4e-20 Identities = 157/217 (72%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || |||||||| ||||| | || | ||||| ||||||||||| || |||| Sbjct 1919649 AGCCCTTGTGAAAACCGACATTCAGGTAGCTCTCCCTTCTGGGTGCTACGGGAGAGTAGC 1919590 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| ||||| ||||| | ||| || | || || || || || ||||| | |||| Sbjct 1919589 TCCACATTCTGGTTTGGCTGCAAAATACCTCATAGATGTAGGGGCTGGTGTCACAGATGA 1919530 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTAT 31944 ||| ||||||||||| ||||| || | |||||||||||| | ||| || | || | Sbjct 1919529 AGATTATAGAGGAAATGTTGGTGTTCTAGTGTTTAATTTTG--GCAAAGTC-TGAAG--T 1919475 Query 31945 AAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 |||||||| ||| | | || || || ||||| ||| Sbjct 1919474 CAAAAAGGGTGATGGAATTGCACAGCTCATTTGTGAA 1919438 >seq6666 Length=10785547 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| |||||||| ||| || | ||||| |||||||| || || ||||||| | Sbjct 1148393 GTGAAAACTGATATTCAGATTCCTCTTCCTTCTGGGTGCTATGGGAGAGTAGCTCCATGT 1148334 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||| | ||||| | |||||||| || || || | || ||||| |||||| ||| ||| Sbjct 1148333 TCTAGCTTGGCTGCAAAACACTTCATAGATGTAGAAGCTGGTGTCATAGATGAAGATTAT 1148274 Query 31892 AGAGGAAACGTTGGAATTGT 31911 |||||||| ||||| |||| Sbjct 1148273 AGAGGAAATGTTGGTGTTGT 1148254 >seq1453 Length=4135625 Score = 98.7 bits (108), Expect = 8e-16 Identities = 100/130 (77%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || |||||||||||||||||||| || || | Sbjct 1826296 AAAATCTT---ACCAAATTTTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCTAAGA 1826240 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 1826239 TGTGAGAGATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 1826180 Query 5041 TTAAATCAAC 5050 ||||||||| Sbjct 1826179 ATAAATCAAC 1826170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426993514508408