Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq780 331 7e-86 seq2230 194 1e-44 seq6777 140 2e-28 >seq780 Length=6765806 Score = 331 bits (366), Expect = 7e-86 Identities = 486/688 (71%), Gaps = 5/688 (1%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 |||| || || || || || | || |||||| | |||||||| || | ||||| ||||| Sbjct 32484 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCGGCTCAATGTGATTCAGGT 32425 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | ||| || ||||||| ||||| ||||| || || || | || || |||||||| | Sbjct 32424 AAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGACGTGTG 32365 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||||| | || | ||||||||||||||| ||||| || || || ||||||| Sbjct 32364 CGATCATGTA-----GCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGT 32310 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | || ||| ||||||| ||||| || || ||||| |||| ||||| ||||| || | Sbjct 32309 CTCCTGACATCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACGTAGAACTGGCAAA 32250 Query 27344 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 27403 |||||||||||| || || |||||||| | ||||| || ||||| || |||| || Sbjct 32249 GGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGA 32190 Query 27404 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 27463 |||| | ||||| || |||||| | |||| ||| | |||||||| ||||| | Sbjct 32189 TGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTA 32130 Query 27464 CCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATT 27523 | || | || || ||| ||| || |||| || || || ||||||||||| | Sbjct 32129 CTCCTTGATCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACT 32070 Query 27524 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 27583 | || || || || || || | || || ||| | ||| ||| ||| |||||| Sbjct 32069 GAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCA 32010 Query 27584 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 27643 | ||||||| ||| || ||||| |||||||| || || ||||| || ||||| || | Sbjct 32009 AGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAG 31950 Query 27644 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 27703 ||||||||| || ||| |||||||||| ||||||| || |||| || || || | Sbjct 31949 CGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACAC 31890 Query 27704 TCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACA 27763 ||||| || || || ||||| | | | |||| ||| | ||||| || |||| Sbjct 31889 GTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACA 31830 Query 27764 CGGACAAGACTCCCGTGCCCGTCCTGTC 27791 | |||| | || ||||| || | ||| Sbjct 31829 CCGACAGGGTGCCGGTGCCTGTGCGGTC 31802 >seq2230 Length=20112346 Score = 194 bits (214), Expect = 1e-44 Identities = 394/578 (68%), Gaps = 13/578 (2%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| || || || | || ||||| | |||||| | || | ||||||||||| Sbjct 11223115 TGGGAAAGGC-CTTGGTTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 11223173 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | ||| || ||||||| ||||| ||| | || || || | || || |||| ||| | Sbjct 11223174 AAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 11223233 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||||| ||||| || | |||||||||| ||| |||| || || || ||| ||| Sbjct 11223234 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCTGT 11223293 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC-TCCATCGCTTACGTAAAACTGACAT 27342 | || ||||||||||| ||||| || || ||||| | || | ||||| || || || Sbjct 11223294 CTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCAC-CACGTAGAAGTGGCAA 11223351 Query 27343 ATGGCGTGGCACGGAGGAAG-------AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 27395 | ||| |||||| | || || | ||||| | ||||| | ||||| || Sbjct 11223352 AGGGCATGGCACAGGGGCAGGGTGGCAGGGTATGAGAGGAAGATCTTT-TGATTCCAAGC 11223410 Query 27396 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAG 27455 || | ||||| | |||||||| |||||| | |||| ||| | | |||||||| Sbjct 11223411 ACATAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCACCTTTTGCAG 11223470 Query 27456 CTGATCCACCCCCATCCCCGAGTA-GTCTACCCTCATGTCCGTGTACTCTGCTCCGAAAT 27514 || || || || | || || | || || || |||| || || | ||| Sbjct 11223471 TTGGTCTACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAAAG 11223530 Query 27515 GCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCC 27574 ||||||| || || | || || || || | || || ||||| ||| || || Sbjct 11223531 GCCTCCACTGAAAGCTATAAACTGGGCCTAAATCCCCTTCTTCTCTGGTGGAGAGTACCA 11223590 Query 27575 TCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGA 27634 ||||||| ||||||| ||| |||| ||| |||||||| || || ||||| || | Sbjct 11223591 GGCTGTCCAAGAAGTCTCGGGACCCGTGGGCATCCCAGATTTTCACTCCCTTGGAAGACA 11223650 Query 27635 GCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 27672 |||| || | |||||||| || ||| ||||||||| Sbjct 11223651 GCTCCTTAGCATTTGTGGAGCCCTTGATCAACCACAGC 11223688 >seq6777 Length=13026147 Score = 140 bits (154), Expect = 2e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 785391 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 785332 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || ||||||||| | ||||| || || ||||| || | Sbjct 785331 ACACCCAGGCCCATGTCTCCTGACCTCTGGAACAGCTGGCAGGACAGCTCACCGTTCACC 785272 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||||| ||||| || | |||||||||||| || || ||||||||| Sbjct 785271 ACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGG 785227 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || ||||||||||| || || || || || || || | || Sbjct 782138 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 782079 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 782078 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 782019 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 782018 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 781971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369458671695656