Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1386 349 5e-91 seq7110 325 6e-84 seq1508 136 6e-27 seq1453 107 3e-18 seq8888 104 3e-17 seq5999 98.7 1e-15 >seq1386 Length=4420875 Score = 349 bits (386), Expect = 5e-91 Identities = 552/797 (69%), Gaps = 42/797 (5%) Strand=Plus/Plus Query 46456 ATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATG 46515 || ||||| ||||| |||||||| || ||| ||||||| |||||||| || ||| Sbjct 837337 ATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 837396 Query 46516 AGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATT 46575 || || || || || |||||||| || ||||| ||||| || | || |||| ||| Sbjct 837397 AGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATT 837456 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 || || | ||| | | ||| ||| || | || ||||| ||||| | || ||| Sbjct 837457 ATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCA 837516 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 || ||||| || | || || ||||| ||||| | ||| || ||||||||||| || ||| Sbjct 837517 AAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGC 837576 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 || || || || ||||||||||| ||||| | || ||||| ||||||||||| || ||| Sbjct 837577 ATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCT 837636 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC------------TGGCATCA--T 46801 || || || || || || || | | ||||| | || || ||| | | Sbjct 837637 TCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCATTACGT 837696 Query 46802 T--------ATG---AATCCACCTTTGA-----------------GCCCAATCAGCCTTT 46833 | ||| ||| | ||||| |||||||| ||||| Sbjct 837697 TGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTC 837756 Query 46834 TTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCT 46893 |||||||||||||||||||| || ||||| || |||||||| | |||| | |||| Sbjct 837757 TTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCT 837816 Query 46894 TTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATC 46953 |||| || || || || | |||||||||||||| ||||| |||||||| || || || Sbjct 837817 TTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATT 837876 Query 46954 TGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGAC 47013 | || || || ||||| | ||||| |||||||| || ||| | ||| | | | | Sbjct 837877 AGGAAGCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTAAACC 837936 Query 47014 AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAA 47073 || || ||||| ||||| |||||||| || ||||| || |||| ||||| ||| ||| Sbjct 837937 AAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGCAAAATGAAA 837996 Query 47074 TATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 47133 ||| | || || | |||| | ||||| | || || || || | || || ||| Sbjct 837997 TATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCT 838056 Query 47134 TCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGG 47193 ||||||||||| || || ||||| ||||| |||||||| | ||| |||||| | |||| | Sbjct 838057 TCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCG 838116 Query 47194 ATCGGAAAAATAACAAA 47210 || ||||| || ||||| Sbjct 838117 ATAGGAAAGATGACAAA 838133 >seq7110 Length=16720443 Score = 325 bits (360), Expect = 6e-84 Identities = 625/927 (67%), Gaps = 42/927 (5%) Strand=Plus/Minus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| |||||||| | || || || ||||| | ||||| | || ||||| || ||| Sbjct 13122559 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 13122500 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAAT 46443 |||| ||| ||||| |||||||| ||||| ||||| || | ||| || |||| Sbjct 13122499 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 13122440 Query 46444 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAA 46503 || | || || ||||| ||||| |||||||| || ||| ||||||| ||| Sbjct 13122439 CCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAA 13122380 Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563 ||||| || ||||| || || | || |||||||| || ||||| ||||| || | || Sbjct 13122379 TTCATCCCAATGAGCTTCACTGTCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 13122320 Query 46564 GCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAAC 46623 |||| ||||| || | ||| | | ||| ||| || | || ||||| ||| Sbjct 13122319 GCATTGACGATTATTTATTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 13122260 Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 || | || ||||| ||||| || | || || ||||| ||||| | ||| || |||||| Sbjct 13122259 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 13122200 Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA 46743 ||||| || ||||| ||||| || || |||||||| ||||| | || ||||| |||||| Sbjct 13122199 GTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 13122140 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC--TGG----CA 46797 ||||| || ||||| || || || || || || | | ||||| | || ||| || Sbjct 13122139 AAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACA 13122080 Query 46798 ---TCATTATG----------------AATCCACCTTTG-----------------AGCC 46821 ||||| | ||| | ||||| ||| Sbjct 13122079 ATGCCATTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCC 13122020 Query 46822 CAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttt 46881 ||||| ||||| |||||||||||||||||||| || || || || |||||||| | || Sbjct 13122019 CAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTT 13121960 Query 46882 tCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTT 46941 || | ||||| || || || || || | |||||||||||||| ||||| |||||| Sbjct 13121959 TCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTT 13121900 Query 46942 TCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAA 47001 || || || || || || || || ||| | ||||| |||||||| || ||| | | Sbjct 13121899 TCCATGGCAATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTTGGCTA 13121840 Query 47002 AATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACA 47061 | | || || || ||||| |||| || ||||| || ||| | || | || ||| Sbjct 13121839 AGCCACTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCAGGACA 13121780 Query 47062 TGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGAT 47121 || | | |||||| | | || | |||| | | || | || || || || Sbjct 13121779 TGCGAAGTGAAATATCTCTACTCAGGCTTCAGGGCTTCCTGGTGCTGAATGTCCTTGGAA 13121720 Query 47122 ATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATA 47181 | || || || ||||| |||||||| || ||||| || || ||| |||| | ||| ||| Sbjct 13121719 AGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCCAAATA 13121660 Query 47182 TCACGATATTGGATCGGAAAAATAACA 47208 ||||| |||| ||| ||||| || ||| Sbjct 13121659 TCACGGTATTCGATAGGAAAGATGACA 13121633 >seq1508 Length=3848527 Score = 136 bits (150), Expect = 6e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 149384 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 149443 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| |||||||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 149444 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 149503 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 149504 TTTCTTATACCAT 149516 Score = 123 bits (136), Expect = 4e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| || || |||||| ||| | || || || ||||| || | Sbjct 147152 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 147211 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| |||||||| |||||||||||||| ||||| ||||| || | | ||| | Sbjct 147212 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 147271 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | ||| || ||| ||| || | ||||| |||| Sbjct 147272 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 147322 Score = 114 bits (126), Expect = 2e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| |||||||| ||||| | || || ||||| || || || || || || Sbjct 179971 CTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCGATCCTTGCTGCCAGGATG 180030 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || | |||||||| | Sbjct 180031 GCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAGAGTATCTAGT 180090 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | |||||| || || | |||| ||||| || |||||||||| Sbjct 180091 TCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 180136 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| || |||||||| || ||| Sbjct 166917 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 166976 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 166977 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATGCCCACAGATACCCTCATCAAC 167036 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 167037 ATATGCTGTGGTCTTTC 167053 >seq1453 Length=4135625 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| || || |||||||| ||||| | || | Sbjct 1830592 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 1830533 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 1830532 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1830473 Query 46772 CGAC 46775 | || Sbjct 1830472 CCAC 1830469 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| || ||| | Sbjct 1822722 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATGTCAGG 1822663 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 1822662 GTACTGGATTGGAAAGATGACAAATC 1822637 >seq8888 Length=9016713 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || ||||| ||||| | ||| || ||||||||||| || ||||| || || || |||||| Sbjct 1702278 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 1702337 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || ||||| || || || || || Sbjct 1702338 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 1702397 Query 46774 AC 46775 || Sbjct 1702398 AC 1702399 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || || || | |||||||||||||| ||||| |||||||| || || Sbjct 1704272 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 1704331 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || || || ||||| | ||||| |||||||| || ||| Sbjct 1704332 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 1704377 >seq5999 Length=11637418 Score = 98.7 bits (108), Expect = 1e-15 Identities = 218/322 (68%), Gaps = 15/322 (5%) Strand=Plus/Minus Query 44402 ATCTAGAGATTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGC 44461 ||||| | ||| |||||||||| || || | | |||| |||| | | || || || || Sbjct 8324958 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTGAAATATCCGTTCACAAATGAGCTGTGC 8324899 Query 44462 TATTCTATCACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCC 44521 |||| |||||| | || | || ||| | ||||| ||| ||| | || | || | Sbjct 8324898 AATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACA 8324839 Query 44522 AATGTTCCCCCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAG 44578 | || || ||||||||||||||| | || ||| |||| ||||| || |||| Sbjct 8324838 ACCATTTCCTCTATAATCTTCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGC 8324779 Query 44579 AGAAAGACCCGATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGGCATAGACATAC 44634 || | || || | || |||| ||| ||||| ||||| || | || || Sbjct 8324778 AGCCAAGCCAGAACGTGGAGCTACTCTCCCATAGCACCCAGAA----GGAAGAGCTATCT 8324723 Query 44635 GAATATCTGTTTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACT 44692 |||| |||||||| | ||| | |||||||| ||| || | || ||||| || ||||| Sbjct 8324722 GAATGTCTGTTTTCA-CAA-GGGCTTTCTCCATAGGTGGTACTGTGTAATCATAGGCACT 8324665 Query 44693 GTATAAATCATATCCTGCCGCA 44714 ||||| ||||| || || ||| Sbjct 8324664 GTATAGGTCATAGCCCGCGGCA 8324643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712838367736320