Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1386 181 1e-40 seq7110 114 1e-20 seq1453 111 2e-19 seq8888 93.3 4e-14 seq1119 84.2 2e-11 >seq1386 Length=4420875 Score = 181 bits (200), Expect = 1e-40 Identities = 410/623 (66%), Gaps = 39/623 (6%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| ||||| |||| || || || || ||||| | |||||| |||||||| | Sbjct 837511 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 837570 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || ||||| | ||||||||||| | ||| ||||| | ||||| || || |||||||| Sbjct 837571 CCGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 837630 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAA-ATGTTGCATTATAATC--- 23684 || || || || || |||||||| || | |||| ||| | |||| | | ||| Sbjct 837631 ATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCA 837690 Query 23685 ---------AGAA---------ATCCAttttttt-----------------GTCCAATTA 23709 |||| || | | ||| | | ||||| Sbjct 837691 TTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCT 837750 Query 23710 GCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCA 23769 |||||| |||||||| ||||| ||||| || || |||||||| |||||| Sbjct 837751 GCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTG 837810 Query 23770 TTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATA 23829 |||| | || || || ||||| || | |||||||||||||||||| || ||||| || Sbjct 837811 GAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATG 837870 Query 23830 GCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTT 23889 ||||| | || ||||| ||||| | ||||| | | ||||| || | ||| Sbjct 837871 GCAATTAGGAAGCCATAGAAACAACAGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGC 837930 Query 23890 TTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTT 23949 | | | || ||||| || || || |||||||| || ||||||||||| ||||||| Sbjct 837931 TAAACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGCAAA 837990 Query 23950 ATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCA 24009 || |||| ||| || |||| | || ||| | | ||| || || || | || Sbjct 837991 ATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCC 838050 Query 24010 ACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTA 24069 || || ||| |||||||||| ||| || ||||||||| |||||||||||| Sbjct 838051 ACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGG 838110 Query 24070 TGTTGTATTGGAAATATTACGAA 24092 | || || ||||| || || || Sbjct 838111 TATTCGATAGGAAAGATGACAAA 838133 >seq7110 Length=16720443 Score = 114 bits (126), Expect = 1e-20 Identities = 250/381 (66%), Gaps = 39/381 (10%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| ||||| |||| || || || || ||||| | |||||| |||||||| | Sbjct 13122253 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 13122194 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || ||||| | ||||||||| || | ||| ||||| | ||||| || || |||||||| Sbjct 13122193 CCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 13122134 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAA-ATGTTGCATTATAATC--- 23684 || || || || || |||||||| || | |||| ||| | |||| | | ||| Sbjct 13122133 ATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATTACGTTGGAGAACAATGCCA 13122074 Query 23685 ---------AGAA---------ATCCAttttttt-----------------GTCCAATTA 23709 |||| || | | ||| | | ||||| Sbjct 13122073 TTACGTTGGAGAACAATGGACAATGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCT 13122014 Query 23710 GCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCA 23769 |||||| |||||||| ||||| ||||| || || |||||||| |||||| Sbjct 13122013 GCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATTCCCTTTCTTTG 13121954 Query 23770 TTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATA 23829 |||| || || || ||||| || | |||||||||||| ||||| || ||||| || Sbjct 13121953 GAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTATGTTTTCCATG 13121894 Query 23830 GCAATCTGAAACCCATAAAAA 23850 ||||| || || ||||| ||| Sbjct 13121893 GCAATTTGGAAGCCATAGAAA 13121873 >seq1453 Length=4135625 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | |||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 1830592 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 1830533 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 1830532 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1830473 Query 23651 CCAC 23654 |||| Sbjct 1830472 CCAC 1830469 >seq8888 Length=9016713 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 || || || ||||| | |||||| |||||||| | || ||||| | ||||||||||| Sbjct 1702278 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 1702337 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || || |||||||| || || || || || |||||||| Sbjct 1702338 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 1702397 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 1702398 ACGACACGT 1702406 >seq1119 Length=26622846 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| | ||||||||||||||||| |||||| ||||||||||||| | Sbjct 14217561 CTCCTGGGCTCAAGCAGTCCTCCTGCCTCAGCCTCCTGAGTAGGTGGGATTACAGGCTCA 14217502 Query 8465 AGCCACCACGCCAAGC 8480 |||||||| || ||| Sbjct 14217501 GGCCACCACACCCAGC 14217486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521417755566400