Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq953 165 1e-35 seq9891 163 4e-35 >seq953 Length=6702869 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||| ||||| ||||| || |||||||||||| || ||||| || ||||| ||||| Sbjct 2030646 GTCTGAAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 2030705 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||||| ||||| || |||||||||||||| || ||||| || || ||||| Sbjct 2030706 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 2030765 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | |||| || ||| || || | || || |||||||| | Sbjct 2030766 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 2030825 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || |||| |||| Sbjct 2030826 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAATTATCT 2030874 Score = 134 bits (148), Expect = 2e-26 Identities = 212/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | || || ||||| || || ||||| | |||| ||||||||||| | Sbjct 2028979 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTG 2029038 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | ||| ||| || || || ||||| || || ||||| |||||||||||| Sbjct 2029039 AGGCAGTGGTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 2029098 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || || || || |||| || ||||| | |||||| || ||||| | || | Sbjct 2029099 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCCCCAACTTCTA 2029158 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| || |||||||||| || || || ||||| |||| | | | ||||| Sbjct 2029159 CCATGGTCTCCCCAAAGATGGCGTCCGGTCGAGGTTTTTCTACCAGAAGAGCAGGGTACA 2029218 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | ||| || || || || | || ||||| || ||||| |||| Sbjct 2029219 GCTCCATGGCGTCAATGTCACCATAGAGCGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 2029278 Query 8583 CTGT 8586 |||| Sbjct 2029279 CTGT 2029282 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| | | |||| | ||||| || || |||||| ||| ||| | || Sbjct 2031684 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 2031743 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 2031744 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 2031803 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | ||||| |||||||||||| | | | ||| || |||| Sbjct 2031804 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 2031863 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | | |||| || ||||| Sbjct 2031864 TTTCCTCCCTGAAAAATGAGAA 2031885 Score = 86.0 bits (94), Expect = 9e-12 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| | ||||| ||||| || | ||| || | |||||| | Sbjct 2030079 CTTACCCTGCCAGCAATTTGCCTAGTGAATGATTCAACAAACTGAGTGAGGCCGTGTTCC 2030138 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063 | || | ||| ||||| |||| || | |||| || | | |||||||| | Sbjct 2030139 AGTAGGAGGGAGTTGTTATAGATAAATTGCTGATAGTTGTAGTGTTGGCCATCAATCTGA 2030198 Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123 || | || |||| || | ||||||||| || | |||||||||| | | ||||| Sbjct 2030199 AAGGTGTCAGGCAGAAGGGCATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACGG 2030258 Query 9124 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182 |||||||||||||| | | ||| ||||| || || | |||| ||| | || || Sbjct 2030259 TTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGTG 2030317 Query 9183 GTAGCCGCTGAGCTGCTGAACGTA 9206 ||||| || || ||||| || || Sbjct 2030318 ATAGCCACTCAGGTGCTGTACATA 2030341 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || || | ||| || ||||| |||| || | | Sbjct 2032291 TCACCTTTCACACCCATGGGCGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 2032350 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||| || || || || |||||||||||| || ||||| | | || || | Sbjct 2032351 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTT 2032410 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || ||||| ||||||| || ||||| |||| Sbjct 2032411 GGCGGGCTCTCAATCAGATGTGATCTCGCTGA 2032442 >seq9891 Length=223 Score = 163 bits (180), Expect = 4e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 9262 AACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACCCTGTTG 9321 ||||| ||||| || |||||||||||| || ||||| || ||||| ||||| ||||| Sbjct 223 AACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACTCTGTTA 164 Query 9322 TGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAAGCCTCT 9381 ||||||| ||||| || |||||||||||||| || ||||| ||||| ||||| | || Sbjct 163 TGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAGACTTCC 104 Query 9382 TGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGG 9441 || || ||||| | |||| || ||| || || | || || |||||||| | ||||| Sbjct 103 TGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCGACCTGA 44 Query 9442 ACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||||||| | ||| |||||||| || || |||| |||| Sbjct 43 GTATCTTTGACTGTGGGAGGATACATCTCGCCACCAATTATCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716780236695040