Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq366024 297 2e-75 seq404197 242 4e-59 seq418289 102 8e-17 >seq366024 Length=42324 Score = 297 bits (328), Expect = 2e-75 Identities = 590/866 (68%), Gaps = 12/866 (1%) Strand=Plus/Minus Query 16669 CATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATAT 16728 ||| || || || |||| || | || || | |||||||| || || || || || || Sbjct 18348 CATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAAT 18289 Query 16729 ATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCG 16786 ||||||||| || ||||| ||||| || ||||||| || | | ||||| || Sbjct 18288 ATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAA--AACCCAGCTCC 18231 Query 16787 GCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCT 16846 || | ||| || || || ||||| || || || ||| || ||| ||||| || Sbjct 18230 CGCATAAGTCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCA 18171 Query 16847 ATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTA 16906 || || || || || || ||||| | || || ||||| ||| || | Sbjct 18170 ATGAGCTTCACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACG 18111 Query 16907 ATAAT--ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGAC 16964 || || | | | |||| | ||| || ||| | ||| || ||||| || ||||| | Sbjct 18110 ATTATTTATTTG--ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAATATCAGGC 18053 Query 16965 ATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACC 17024 | || || || || ||||| |||||||||||||| |||||||| || |||||||| | | Sbjct 18052 AGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGC 17993 Query 17025 CGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATA 17084 |||| ||| |||||||| || | ||| ||||||| || || || ||||||||||| | Sbjct 17992 CGGGTATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGA 17933 Query 17085 TACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAA 17144 | || || || | ||||| || | || ||||| | ||||| || ||||||| | | Sbjct 17932 TTCCTTCCACTGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGTCCCCGA 17873 Query 17145 TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA 17204 |||| | |||| || || || | ||||| ||| ||| || || || || || | Sbjct 17872 TCCAGCACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGA 17813 Query 17205 ATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 | | | ||| |||| | | | || | || || || || ||||| || || ||||| Sbjct 17812 AGAGAAATTCCCTTTCTTTGGAA--TCTTTAATGTAAGTGTCAATGAGGAGACTATACAT 17755 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322 ||| || || ||||| |||||||| || | || || || || || |||||||||| || Sbjct 17754 TTCAGAATGGATGTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAAT 17695 Query 17323 TTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 |||||||| | || | ||| | | ||||| || || ||||| || || || || Sbjct 17694 CTGAACTTCTTGGCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGC 17635 Query 17383 GAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTC 17442 || || |||| |||||| |||||||||| | || || || | || | ||||| Sbjct 17634 AAAGAAAGCCAGAATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTG 17575 Query 17443 CTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTT 17502 || | || ||||| | ||||| ||||| | |||||||| |||| | || || || Sbjct 17574 CTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTT 17515 Query 17503 ATACATATTCCAAATATCATTGTATT 17528 |||||| | ||||||||||| ||||| Sbjct 17514 ATACATCTGCCAAATATCATGGTATT 17489 >seq404197 Length=65104 Score = 242 bits (268), Expect = 4e-59 Identities = 578/868 (67%), Gaps = 8/868 (1%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || |||| || | || || || |||||||| || || || || Sbjct 53076 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 53017 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || |||||||||| || ||||| ||||| || ||||||| || | | |||| Sbjct 53016 GAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAA--AACCCA 52959 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 | || || | ||| || || | |||| || || || ||| || |||| |||| Sbjct 52958 GCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAATTCA 52899 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || || || | | || ||||| | || || ||||| ||| || | Sbjct 52898 TCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT 52839 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961 ||||| |||| | ||| || ||| | ||| || ||||| ||||||| Sbjct 52838 TGACGATAATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCA 52779 Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021 | | || || || || ||||| |||||||||||||| |||||||| || |||||||| | Sbjct 52778 GGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGA 52719 Query 17022 ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGA 17081 ||||||||| ||||| |||||| | ||| ||||||| || || || |||||||||| Sbjct 52718 GGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGA 52659 Query 17082 ATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTAC 17141 | || || || || | ||||| || | | || | |||| | || ||||||| Sbjct 52658 AGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTGTCCT 52599 Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT 17201 ||||| | |||| || || || | ||||| ||| ||| || || ||||| | Sbjct 52598 CGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGT 52539 Query 17202 T--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | | | || ||| |||| | | | | || || || || || ||||| || || || Sbjct 52538 TGAAGAGAAATTCCCTTTCTTTGGAATCTTGA--ATGTAAGTGTCAATGAGGAGACTATA 52481 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 |||||| || |||||||| |||||||| || || || || || || | ||||||||| Sbjct 52480 CATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCCGT 52421 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 || |||||||| | | || ||| | || ||||| || || | |||||| || || Sbjct 52420 AATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTTGC 52361 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCA 17439 || | || | || | |||| | |||||||| | || || || | || | || Sbjct 52360 TGCAGAGAAAGGCAGGACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCG 52301 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 || || | || ||||| | ||||| || || | ||||| || |||| | || || Sbjct 52300 GTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTT 52241 Query 17500 TTTATACATATTCCAAATATCATTGTAT 17527 ||| |||| | |||||||||| |||| Sbjct 52240 CTTACACATCTGCCAAATATCACGGTAT 52213 >seq418289 Length=29330 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||| |||||||| || |||||||| | ||||||||| |||||||| | Sbjct 26792 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 26733 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| || || || || | ||||| | Sbjct 26732 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 26673 Query 17106 C 17106 | Sbjct 26672 C 26672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514819143901920