Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 297 2e-75
seq404197 255 6e-63
seq400361 114 1e-20
seq418289 93.3 4e-14
>seq366024
Length=42324
Score = 297 bits (328), Expect = 2e-75
Identities = 578/848 (68%), Gaps = 8/848 (1%)
Strand=Plus/Minus
Query 15939 AGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAG-TAG-C 15996
|||||||||| || || || | || ||||| |||||||| ||||| ||||| || |
Sbjct 18316 AGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTC 18257
Query 15997 TGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATA 16056
|||||| ||| | ||||| ||| | | ||| ||||| || ||||| || ||
Sbjct 18256 TGAAAAC--CTTGCTAAAACCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTA 18199
Query 16057 TTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAA 16116
|| ||| || |||||| || || || || || || || || | || | ||
Sbjct 18198 CTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAA 18139
Query 16117 TTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGT 16176
| |||||||| ||| || | || || | || ||| || || ||| |
Sbjct 18138 CTCCTGTTCTATTCTAACTGCATTGACGATTATTTATTTGACTCTCTGCTCCGAAGGTTT 18079
Query 16177 ATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCT 16236
|| |||||||| || || || || || ||||| || |||| || |||||||||||
Sbjct 18078 GTGTAGCAGGTGTTTGAATATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCT 18019
Query 16237 GATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT 16296
|||||||| |||||||| || | || || || |||||||| || | |||||||||
Sbjct 18018 AATAAGTTCATTGGAAAATGTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATAT 17959
Query 16297 CGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356
|| ||||| || || |||||||| || || || || | ||||| || | || |||||
Sbjct 17958 CGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTC 17899
Query 16357 CGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTAT 16416
| |||||||| ||||| | | ||||| | |||| || || || | ||||
Sbjct 17898 TCCATACGTAGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTAC 17839
Query 16417 ACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATA 16474
|||| ||| || || || || || | | || ||| |||| | || ||| | ||
Sbjct 17838 ACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGA--ATCTTTAATG 17781
Query 16475 TACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAAT 16534
|| || ||||| || | ||| |||||||| || || ||||| || ||||| || | ||
Sbjct 17780 TAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAG 17721
Query 16535 CCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTC 16594
|||||||| || || || |||| || || ||||| | ||| | ||| ||| |||
Sbjct 17720 CCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTT 17661
Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654
||||| || || || |||||||| ||||| || |||| || ||| |||||||||| |
Sbjct 17660 TCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTC 17601
Query 16655 TCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGC 16714
|| |||| | || | ||| | | | || ||||| | ||||| ||||| |
Sbjct 17600 TCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCT 17541
Query 16715 GTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGA 16774
||||||||| |||| | || || |||||||| | ||||||||||| ||||| || |||
Sbjct 17540 GTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTTGATAGGA 17481
Query 16775 AATACGAC 16782
|| | |||
Sbjct 17480 AAGATGAC 17473
>seq404197
Length=65104
Score = 255 bits (282), Expect = 6e-63
Identities = 591/885 (67%), Gaps = 8/885 (1%)
Strand=Plus/Minus
Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961
|| ||||| || || || || | || | || || ||||||||||| || || || |
Sbjct 53076 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 53017
Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019
|| |||| |||||||| ||||| ||||| || ||||||| ||| | ||||
Sbjct 53016 GAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAAC--CTTGCTAAAACCCA 52959
Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079
| ||| | | ||| ||||| | |||| || || || ||| || ||||||| |
Sbjct 52958 GCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAATTCA 52899
Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139
| || || || || | | || | || | || | ||||||||| ||| || |
Sbjct 52898 TCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT 52839
Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199
|| || || || ||| || || ||| | || |||||||| ||||| |
Sbjct 52838 TGACGATAATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCA 52779
Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259
| | || ||||| || |||| || ||||||||||| |||||||| |||||||| || |
Sbjct 52778 GGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGA 52719
Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319
|| ||||| ||||| |||||| | ||||||||||| ||||| || || |||||||
Sbjct 52718 GGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGA 52659
Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379
| || || || || | ||||| || | | || | |||| |||| ||||| |
Sbjct 52658 AGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTGTCCT 52599
Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439
||||| | |||| || || || | |||| |||| ||| || || ||||| |
Sbjct 52598 CGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGT 52539
Query 16440 T--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497
| | | || ||| |||| | |||| | || || || || ||||| || | ||| ||
Sbjct 52538 TGAAGAGAAATTCCCTTTCTTTGGAATCTTGA--ATGTAAGTGTCAATGAGGAGACTATA 52481
Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557
|||||| || |||||||| || ||||| || || || |||||||| | | || ||||
Sbjct 52480 CATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCCGT 52421
Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617
|| || ||||| | || || ||| ||||||| ||||| || | |||||||||||
Sbjct 52420 AATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTTGC 52361
Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677
||| | || | || | ||| | |||||||| | || |||| | || | ||
Sbjct 52360 TGCAGAGAAAGGCAGGACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCG 52301
Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737
| | | || ||||| | ||||| || || | |||||| ||| |||| | || ||
Sbjct 52300 GTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTT 52241
Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782
||| |||| | |||||||||| |||| || ||||| | |||
Sbjct 52240 CTTACACATCTGCCAAATATCACGGTATCCGATAGGAAAGAAGAC 52196
>seq400361
Length=55729
Score = 114 bits (126), Expect = 1e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| ||||||||||| | || ||||| ||||| |||||
Sbjct 38420 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 38479
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| |
Sbjct 38480 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 38539
Query 16344 C 16344
|
Sbjct 38540 C 38540
Score = 84.2 bits (92), Expect = 2e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984
||| ||||| || ||||| || ||||| ||||||||||| || |||||||||||||||||
Sbjct 24225 AACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCCATAAAATCAAA 24284
Query 15985 GGGATT 15990
||||||
Sbjct 24285 GGGATT 24290
>seq418289
Length=29330
Score = 93.3 bits (102), Expect = 4e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
||||||||||| |||||||| |||||||| || | || ||||| |||||||| ||
Sbjct 26790 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 26731
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||||| ||||| || || |||||||| || || || || | ||||| ||
Sbjct 26730 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 26672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 508720243370080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |