Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq366024 297 2e-75 seq404197 255 6e-63 seq400361 114 1e-20 seq418289 93.3 4e-14 >seq366024 Length=42324 Score = 297 bits (328), Expect = 2e-75 Identities = 578/848 (68%), Gaps = 8/848 (1%) Strand=Plus/Minus Query 15939 AGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAG-TAG-C 15996 |||||||||| || || || | || ||||| |||||||| ||||| ||||| || | Sbjct 18316 AGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTC 18257 Query 15997 TGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATA 16056 |||||| ||| | ||||| ||| | | ||| ||||| || ||||| || || Sbjct 18256 TGAAAAC--CTTGCTAAAACCCAGCTCCCGCATAAGTCTGTCTGCCACGAATTCGATGTA 18199 Query 16057 TTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAA 16116 || ||| || |||||| || || || || || || || || | || | || Sbjct 18198 CTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTCACTGGCAGGGCATCCGTGAGGAA 18139 Query 16117 TTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGT 16176 | |||||||| ||| || | || || | || ||| || || ||| | Sbjct 18138 CTCCTGTTCTATTCTAACTGCATTGACGATTATTTATTTGACTCTCTGCTCCGAAGGTTT 18079 Query 16177 ATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCT 16236 || |||||||| || || || || || ||||| || |||| || ||||||||||| Sbjct 18078 GTGTAGCAGGTGTTTGAATATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCT 18019 Query 16237 GATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT 16296 |||||||| |||||||| || | || || || |||||||| || | ||||||||| Sbjct 18018 AATAAGTTCATTGGAAAATGTGAGGCCGGGTATCAGACCTCGTTTTTTGAGCCAGAATAT 17959 Query 16297 CGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356 || ||||| || || |||||||| || || || || | ||||| || | || ||||| Sbjct 17958 CGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCTACGAAACGTTC 17899 Query 16357 CGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTAT 16416 | |||||||| ||||| | | ||||| | |||| || || || | |||| Sbjct 17898 TCCATACGTAGCCTCTTTGTCCCCGATCCAGCACAAGGCCCAATCTGCCTTCTTCTTTAC 17839 Query 16417 ACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATA 16474 |||| ||| || || || || || | | || ||| |||| | || ||| | || Sbjct 17838 ACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTCCCTTTCTTTGGA--ATCTTTAATG 17781 Query 16475 TACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAAT 16534 || || ||||| || | ||| |||||||| || || ||||| || ||||| || | || Sbjct 17780 TAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTAGGAAG 17721 Query 16535 CCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTC 16594 |||||||| || || || |||| || || ||||| | ||| | ||| ||| ||| Sbjct 17720 CCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTGGCTAAACTGCTCCACCAAGTTT 17661 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654 ||||| || || || |||||||| ||||| || |||| || ||| |||||||||| | Sbjct 17660 TCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAATATGCGAAATGAAATATCTC 17601 Query 16655 TCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGC 16714 || |||| | || | ||| | | | || ||||| | ||||| ||||| | Sbjct 17600 TCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCT 17541 Query 16715 GTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGA 16774 ||||||||| |||| | || || |||||||| | ||||||||||| ||||| || ||| Sbjct 17540 GTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTTGATAGGA 17481 Query 16775 AATACGAC 16782 || | ||| Sbjct 17480 AAGATGAC 17473 >seq404197 Length=65104 Score = 255 bits (282), Expect = 6e-63 Identities = 591/885 (67%), Gaps = 8/885 (1%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || ||||||||||| || || || | Sbjct 53076 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 53017 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || |||| |||||||| ||||| ||||| || ||||||| ||| | |||| Sbjct 53016 GAACTATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAAC--CTTGCTAAAACCCA 52959 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 | ||| | | ||| ||||| | |||| || || || ||| || ||||||| | Sbjct 52958 GCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAATTCA 52899 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || || || || | | || | || | || | ||||||||| ||| || | Sbjct 52898 TCCCAATGAGCTTCACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT 52839 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 || || || || ||| || || ||| | || |||||||| ||||| | Sbjct 52838 TGACGATAATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCA 52779 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 | | || ||||| || |||| || ||||||||||| |||||||| |||||||| || | Sbjct 52778 GGAAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGA 52719 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319 || ||||| ||||| |||||| | ||||||||||| ||||| || || ||||||| Sbjct 52718 GGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGA 52659 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || || || | ||||| || | | || | |||| |||| ||||| | Sbjct 52658 AGATTCCTTCCACTGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCTCTTTGTCCT 52599 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 ||||| | |||| || || || | |||| |||| ||| || || ||||| | Sbjct 52598 CGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGT 52539 Query 16440 T--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 | | | || ||| |||| | |||| | || || || || ||||| || | ||| || Sbjct 52538 TGAAGAGAAATTCCCTTTCTTTGGAATCTTGA--ATGTAAGTGTCAATGAGGAGACTATA 52481 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 |||||| || |||||||| || ||||| || || || |||||||| | | || |||| Sbjct 52480 CATTTCCGAATGTATGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCCGT 52421 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 || || ||||| | || || ||| ||||||| ||||| || | ||||||||||| Sbjct 52420 AATCTGAACTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTTGC 52361 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677 ||| | || | || | ||| | |||||||| | || |||| | || | || Sbjct 52360 TGCAGAGAAAGGCAGGACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCG 52301 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 | | | || ||||| | ||||| || || | |||||| ||| |||| | || || Sbjct 52300 GTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTT 52241 Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 ||| |||| | |||||||||| |||| || ||||| | ||| Sbjct 52240 CTTACACATCTGCCAAATATCACGGTATCCGATAGGAAAGAAGAC 52196 >seq400361 Length=55729 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| ||||| ||||| Sbjct 38420 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 38479 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 38480 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 38539 Query 16344 C 16344 | Sbjct 38540 C 38540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| ||||| || ||||| || ||||| ||||||||||| || ||||||||||||||||| Sbjct 24225 AACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCCATAAAATCAAA 24284 Query 15985 GGGATT 15990 |||||| Sbjct 24285 GGGATT 24290 >seq418289 Length=29330 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| |||||||| |||||||| || | || ||||| |||||||| || Sbjct 26790 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 26731 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 26730 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 26672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508720243370080