Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq397970 248 7e-61
seq273439 147 2e-30
>seq397970
Length=5258
Score = 248 bits (274), Expect = 7e-61
Identities = 544/810 (67%), Gaps = 9/810 (1%)
Strand=Plus/Plus
Query 18538 TTCGGAAACGCGATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGAT 18597
||||||| || || || || | ||| || | || | || || ||||| || || |
Sbjct 1589 TTCGGAAGGATGACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCT 1648
Query 18598 ACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCG 18657
||| || || ||||||||||||| | || || || |||||||| || | || ||
Sbjct 1649 ACAGCCTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGCAAGGGTGTTT 1708
Query 18658 TGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAG 18717
||| |||||| | ||||||||| || || || | | || || || | | || |
Sbjct 1709 CGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGG 1768
Query 18718 ATATACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATA 18777
| | || |||||| | || || | | || | | || || ||| |
Sbjct 1769 GAGTGAAAATCTGGGATGCCAATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCA 1828
Query 18778 AAAGA-CACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCG 18836
||| || | |||| | | ||||| |||| ||||| |||||||| |||||||| ||
Sbjct 1829 CCAGAGCAGAAGGGG-ATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCC 1887
Query 18837 GAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTT 18896
||||| ||||| | ||| | |||| | | |||||| | ||||| ||||||| ||
Sbjct 1888 GAATACAAAGATATGGATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTG 1947
Query 18897 ATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCA 18956
| || ||||| ||||| ||||| || | || |||| || | | |||||||||||
Sbjct 1948 ACTGACACAATCAAAACCAACCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCA 2007
Query 18957 AAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCA 19016
|| ||| |||| | |||| ||||| || || ||| | | || ||||| ||||| |
Sbjct 2008 AAAGATCTCCCTCTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTG 2067
Query 19017 AACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCG 19076
|||||||| | |||||||| | |||||||| || || ||||||||||| || || ||
Sbjct 2068 AACGGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCC 2127
Query 19077 TTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAA 19136
|||||||| || | || || || |||||| | || || | || || || ||
Sbjct 2128 TTCAACATCGCCAGCTACGCCCT-----GCTACATGATCGCACACATCACGGGCCTGAAG 2182
Query 19137 ACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCT 19196
| || || || | || || |||| |||||||| |||||| ||||||| || || |||
Sbjct 2183 CCAGGTGACTTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGA-GCT 2241
Query 19197 -TTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAA 19255
| ||| | ||||| ||| |||| ||||| || || | ||| |||||||
Sbjct 2242 GCTGAAAATTCAGCTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAGAATCCTTCGAAA 2301
Query 19256 TGTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACA 19315
|| | || | ||||| || || || |||||| |||| || || ||||| ||
Sbjct 2302 AGTTGAGAAAATTGATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCA 2361
Query 19316 ccccccccTAAAAATGGAAATGGCTCTTTA 19345
||| | | ||||||||||||||| ||||
Sbjct 2362 CCCGACTATTAAAATGGAAATGGCTGTTTA 2391
>seq273439
Length=4507
Score = 147 bits (162), Expect = 2e-30
Identities = 373/560 (67%), Gaps = 18/560 (3%)
Strand=Plus/Plus
Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848
||||| | ||||| || | |||| |||||||| ||| | || ||||| |||||
Sbjct 2021 GGGGATTTAGGCCCAGTTCATAGCTTTCAGTGGAGGTCTTTGGTGGCTGAATACAAAGA- 2079
Query 18849 TGTCAATCAAACT--ATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906
||| || || | ||| || |||||| | || || ||||||| || || || ||||
Sbjct 2080 TGTGGATTTAAATGTATTCACGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGACACAA 2139
Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966
| ||||| || || ||| | || |||| ||| ||| ||||||||| |||| |||
Sbjct 2140 TCAAAACCAAACCTGAAGACAGAAGAATCATTCTATGTGCTTGGAATCAAAAGATCTTCC 2199
Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAAT 19026
|| | |||| || | | | || | || || ||||| | ||| |||
Sbjct 2200 TCTCA-------TACCC---TGCCGCCCTTT--GCCACTTCTACGTGGTGAACCATGAGC 2247
Query 19027 TATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTG 19086
| |||||| | | |||||||| || || || | |||||| || || | |||||| | |
Sbjct 2248 TGTCCTGC-AGCTGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTCCTTCAACGTCG 2306
Query 19087 CTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATT 19146
| | ||||| || || |||||||| | || || | ||||| || || | || || |
Sbjct 2307 CCAGCTATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAAGCCAGGTGACT 2366
Query 19147 TAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTT-TAAAAGTG 19205
| || || |||| |||||||| |||||| || |||| || || ||| | ||| ||
Sbjct 2367 CTGTACACACTTTGGGAGATGCACACATTTACCTGGATCACATTGA-GCTGCTGAAAATG 2425
Query 19206 CAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGAT 19265
||||| || |||| ||||| || || ||||| || |||| || |
Sbjct 2426 CAGCTTCAGGGAGAACCAAGGCCTTTCCCAAAGCTCAAAATCCTTGGAAAAGTTGAGAAA 2485
Query 19266 ATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTA 19325
|| | ||||| || || || |||||| |||| || || | ||| || ||| | |
Sbjct 2486 ATCTATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCATCCCACTATT 2545
Query 19326 AAAATGGAAATGGCTCTTTA 19345
||||||||||||||| ||||
Sbjct 2546 AAAATGGAAATGGCTGTTTA 2565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397452008128980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |