Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq397970 248 7e-61 seq273439 147 2e-30 >seq397970 Length=5258 Score = 248 bits (274), Expect = 7e-61 Identities = 544/810 (67%), Gaps = 9/810 (1%) Strand=Plus/Plus Query 18538 TTCGGAAACGCGATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGAT 18597 ||||||| || || || || | ||| || | || | || || ||||| || || | Sbjct 1589 TTCGGAAGGATGACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCT 1648 Query 18598 ACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCG 18657 ||| || || ||||||||||||| | || || || |||||||| || | || || Sbjct 1649 ACAGCCTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGCAAGGGTGTTT 1708 Query 18658 TGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAG 18717 ||| |||||| | ||||||||| || || || | | || || || | | || | Sbjct 1709 CGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGG 1768 Query 18718 ATATACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATA 18777 | | || |||||| | || || | | || | | || || ||| | Sbjct 1769 GAGTGAAAATCTGGGATGCCAATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCA 1828 Query 18778 AAAGA-CACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCG 18836 ||| || | |||| | | ||||| |||| ||||| |||||||| |||||||| || Sbjct 1829 CCAGAGCAGAAGGGG-ATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCC 1887 Query 18837 GAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTT 18896 ||||| ||||| | ||| | |||| | | |||||| | ||||| ||||||| || Sbjct 1888 GAATACAAAGATATGGATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTG 1947 Query 18897 ATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCA 18956 | || ||||| ||||| ||||| || | || |||| || | | ||||||||||| Sbjct 1948 ACTGACACAATCAAAACCAACCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCA 2007 Query 18957 AAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCA 19016 || ||| |||| | |||| ||||| || || ||| | | || ||||| ||||| | Sbjct 2008 AAAGATCTCCCTCTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTG 2067 Query 19017 AACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCG 19076 |||||||| | |||||||| | |||||||| || || ||||||||||| || || || Sbjct 2068 AACGGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCC 2127 Query 19077 TTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAA 19136 |||||||| || | || || || |||||| | || || | || || || || Sbjct 2128 TTCAACATCGCCAGCTACGCCCT-----GCTACATGATCGCACACATCACGGGCCTGAAG 2182 Query 19137 ACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCT 19196 | || || || | || || |||| |||||||| |||||| ||||||| || || ||| Sbjct 2183 CCAGGTGACTTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGA-GCT 2241 Query 19197 -TTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAA 19255 | ||| | ||||| ||| |||| ||||| || || | ||| ||||||| Sbjct 2242 GCTGAAAATTCAGCTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAGAATCCTTCGAAA 2301 Query 19256 TGTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACA 19315 || | || | ||||| || || || |||||| |||| || || ||||| || Sbjct 2302 AGTTGAGAAAATTGATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCA 2361 Query 19316 ccccccccTAAAAATGGAAATGGCTCTTTA 19345 ||| | | ||||||||||||||| |||| Sbjct 2362 CCCGACTATTAAAATGGAAATGGCTGTTTA 2391 >seq273439 Length=4507 Score = 147 bits (162), Expect = 2e-30 Identities = 373/560 (67%), Gaps = 18/560 (3%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 ||||| | ||||| || | |||| |||||||| ||| | || ||||| ||||| Sbjct 2021 GGGGATTTAGGCCCAGTTCATAGCTTTCAGTGGAGGTCTTTGGTGGCTGAATACAAAGA- 2079 Query 18849 TGTCAATCAAACT--ATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906 ||| || || | ||| || |||||| | || || ||||||| || || || |||| Sbjct 2080 TGTGGATTTAAATGTATTCACGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGACACAA 2139 Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966 | ||||| || || ||| | || |||| ||| ||| ||||||||| |||| ||| Sbjct 2140 TCAAAACCAAACCTGAAGACAGAAGAATCATTCTATGTGCTTGGAATCAAAAGATCTTCC 2199 Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAAT 19026 || | |||| || | | | || | || || ||||| | ||| ||| Sbjct 2200 TCTCA-------TACCC---TGCCGCCCTTT--GCCACTTCTACGTGGTGAACCATGAGC 2247 Query 19027 TATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTG 19086 | |||||| | | |||||||| || || || | |||||| || || | |||||| | | Sbjct 2248 TGTCCTGC-AGCTGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTCCTTCAACGTCG 2306 Query 19087 CTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATT 19146 | | ||||| || || |||||||| | || || | ||||| || || | || || | Sbjct 2307 CCAGCTATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAAGCCAGGTGACT 2366 Query 19147 TAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTT-TAAAAGTG 19205 | || || |||| |||||||| |||||| || |||| || || ||| | ||| || Sbjct 2367 CTGTACACACTTTGGGAGATGCACACATTTACCTGGATCACATTGA-GCTGCTGAAAATG 2425 Query 19206 CAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGAT 19265 ||||| || |||| ||||| || || ||||| || |||| || | Sbjct 2426 CAGCTTCAGGGAGAACCAAGGCCTTTCCCAAAGCTCAAAATCCTTGGAAAAGTTGAGAAA 2485 Query 19266 ATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTA 19325 || | ||||| || || || |||||| |||| || || | ||| || ||| | | Sbjct 2486 ATCTATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCATCCCACTATT 2545 Query 19326 AAAATGGAAATGGCTCTTTA 19345 ||||||||||||||| |||| Sbjct 2546 AAAATGGAAATGGCTGTTTA 2565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452008128980