Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq366024 399 3e-106
seq404197 318 7e-82
seq327453 140 4e-28
seq418289 132 6e-26
seq400361 102 1e-16
seq196131 102 1e-16
seq265909 100 3e-16
>seq366024
Length=42324
Score = 399 bits (442), Expect = 3e-106
Identities = 649/933 (70%), Gaps = 6/933 (1%)
Strand=Plus/Minus
Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 23845
||| |||||| |||| || | ||| ||| ||| || ||||| |||| ||| |
Sbjct 18402 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCAGACTGGACATCACTCTCATCCT 18343
Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905
|| || || || || | || || | || ||||| || ||||| | ||| ||||| ||
Sbjct 18342 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 18283
Query 23906 CATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965
||| || || ||||||| || | | | | |||| |||| || || |
Sbjct 18282 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCCGCATAAG 18223
Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025
||| ||||| || || || || || ||||||| |||||||| || || || ||
Sbjct 18222 TCTGTCTGCCACGAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 18163
Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085
||||| || || | || || || || ||||| || || || | || || |
Sbjct 18162 CACTGGCAGGGCATCCGTGAGGAACTCCTGTTCTATTCTAACTGCATTGACGATTATTTA 18103
Query 24086 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 24145
| | ||| | | || ||| | | | ||||| || |||| || || || ||
Sbjct 18102 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAATATCAGGCAGGCAAAGTC 18043
Query 24146 GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 24205
||||||| |||||||||||| ||||| | ||| |||||||| ||||| ||||| || ||
Sbjct 18042 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGTATCAG 17983
Query 24206 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTAC 24265
|| || ||||| ||||| ||||| || ||||| || ||||||||||| |||||||| ||
Sbjct 17982 ACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 17923
Query 24266 TGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTG 24322
||| |||||||| | | | ||||||||| | | | |||| |||||
Sbjct 17922 TGCAGCAAAGGCTACGAAACGTTCTCCATACGTAGCCTCTTTGTCCCCGATCCAGCACAA 17863
Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382
|||||||| |||||||| |||||||||||||||||||| ||||| || |||||| | |
Sbjct 17862 GGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGAAATTC 17803
Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442
|||| || |||||||| || || ||||| | |||||||||||||| ||||| ||
Sbjct 17802 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGAT 17743
Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT 24502
|||||| ||||| ||| | || || |||||||| | || || |||||||| ||||||
Sbjct 17742 GTTTTCCATGGCAATTAGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTG 17683
Query 24503 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562
| ||| | || | || |||||||| ||||| || ||||| |||||||| || ||||
Sbjct 17682 GCTAAACTGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 17623
Query 24563 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 24622
| ||| || |||||| | || || || | || | ||| | | || || ||
Sbjct 17622 AATATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 17563
Query 24623 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 24682
|| | ||||| ||||| |||||||||| || ||||| || || |||||||| | |||
Sbjct 17562 GGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCA 17503
Query 24683 GATGTCATGATATTGAATTGGAAAAATAACAAA 24715
|| ||||| |||| || ||||| || |||||
Sbjct 17502 AATATCATGGTATTTGATAGGAAAGATGACAAA 17470
>seq404197
Length=65104
Score = 318 bits (352), Expect = 7e-82
Identities = 628/925 (68%), Gaps = 8/925 (1%)
Strand=Plus/Minus
Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 23845
||| |||||| |||| || | ||| ||| ||| || ||||| |||||||| |
Sbjct 53125 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACATCACTCCCATCCT 53066
Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905
|| || || || || | || || || || ||||| || ||||| | ||| |||| ||
Sbjct 53065 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAACTATTCTC 53006
Query 23906 CATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965
||| || || ||||||| || | | | | |||| |||| || || |
Sbjct 53005 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCATAAG 52946
Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025
||| ||||| | || | || || ||||||| | |||||||| || || || ||
Sbjct 52945 TCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCGCAATTCATCCCAATGAGCTT 52886
Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085
|||| | ||| | || || || || ||||| || || || | |||||
Sbjct 52885 CACTGTCGGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATAATTTC 52826
Query 24086 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 24145
| | ||| | | || ||| | | | ||||| ||||||| | || || ||
Sbjct 52825 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGAAGGCAAAGTC 52766
Query 24146 GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 24205
||||||| |||||||||||| ||||| | ||| |||||||| ||||| |||||||| ||
Sbjct 52765 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAG 52706
Query 24206 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTAC 24265
|| | || || ||||| ||||| || ||||| || ||||||||||| |||||||| ||
Sbjct 52705 TCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 52646
Query 24266 TGCCGCAAAGGCAATAAGTC--TTTC--TCCATAACCGGCGCTGTCATGTATCCACTTTT 24321
||| |||||||| | | | |||| | | || || | |||| | |||||
Sbjct 52645 TGCGGCAAAGGCTACGACACGCTTTCAGTACCTAGCCT-CTTTGTCCTCGATCCAGCGCA 52587
Query 24322 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 24381
|||||||| |||||||| |||||||||||||||||||| || || || |||||| | |
Sbjct 52586 AGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAAATT 52527
Query 24382 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 24441
|||| || ||||| || || || ||||| | |||||||||||||||||||| |
Sbjct 52526 CCCTTTCTTTGGAATCTTGAATGTAAGTGTCAATGAGGAGACTATACATTTCCGAATGTA 52467
Query 24442 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTA 24501
||||||| ||||| ||||| || || |||||| | || || |||||||| ||||||
Sbjct 52466 TGTTTTCCATGGCGATTTGGAAGCCATAGAAATAATGGGCTTCCGTAATCTGAACTTCTT 52407
Query 24502 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 24561
| || || || | | |||||||| |||| |||||||| |||||| | || | ||
Sbjct 52406 GGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCGTCACTTGCTGCAGAGAAAGGCA 52347
Query 24562 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 24621
||||| | |||||| | || || || | || | || | | || || |
Sbjct 52346 GGACATGCGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCGGTGCTGAATGTCCT 52287
Query 24622 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 24681
| || | ||||| || || | ||||| || || ||||| || || ||| |||| | ||
Sbjct 52286 TGGAAAGGTCCACCTCCTCAGCCGTCCAGAAGGAAGCCTCAGCGTTCTTACACATCTGCC 52227
Query 24682 AGATGTCATGATATTGAATTGGAAA 24706
| || ||| | ||| || |||||
Sbjct 52226 AAATATCACGGTATCCGATAGGAAA 52202
>seq327453
Length=26950
Score = 140 bits (154), Expect = 4e-28
Identities = 113/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 17785 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 17844
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 17845 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 17904
Query 53270 CTATTTCTAAGACCGTA 53286
|| ||||| | ||| ||
Sbjct 17905 CTGTTTCTTATACCATA 17921
Score = 96.9 bits (106), Expect = 4e-15
Identities = 128/178 (72%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447
|||| || || || || || | || || || |||||||| || || || || || || |
Sbjct 22130 CATAGGTTTCATACGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 22189
Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507
||||||||||||| ||||||| |||||| | || || ||| | || ||||| || |
Sbjct 22190 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 22249
Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565
| | | |||||||| || ||||| | ||||| || ||||| || || || | |||
Sbjct 22250 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 22307
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 26476 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 26535
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
|| || || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 26536 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 26595
Query 54145 CGGTTCCAAGTATAT 54159
|| |||| ||| ||
Sbjct 26596 AGGCTCCAGGTAAAT 26610
>seq418289
Length=29330
Score = 132 bits (146), Expect = 6e-26
Identities = 102/121 (84%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||||||||| ||||| | ||| |||||||| ||||| |||||||| || || || ||||
Sbjct 26792 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 26733
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| |||||||
Sbjct 26732 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 26673
Query 24277 C 24277
|
Sbjct 26672 C 26672
Score = 102 bits (112), Expect = 1e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||||| || || ||||| | |||||||||||||| ||||| |||||||| |||||
Sbjct 24796 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 24737
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
||||| || || |||||||| | || || |||||||| ||||||
Sbjct 24736 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 24691
>seq400361
Length=55729
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218
|| ||||| || || | ||| |||||||| || ||||| ||||| || || | || ||
Sbjct 38422 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 38481
Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277
||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 38482 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 38540
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578
|||||||||||||| ||||||||||||||||||||||| || || | || ||||||
Sbjct 42770 AAATTTTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 42829
Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 24634
|| || || |||| | | || || ||||| | | || ||| || |||| ||| ||
Sbjct 42830 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 42885
>seq196131
Length=2042
Score = 102 bits (112), Expect = 1e-16
Identities = 122/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| |||| ||| |||||||||||||| | || || ||||| || || || || || |
Sbjct 1354 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCGATCCTTGCTGCCAGGA 1295
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
||||||| || || || | ||||| | || || ||| |||| || | || ||| || |
Sbjct 1294 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 1235
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 1234 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 1189
>seq265909
Length=7629
Score = 100 bits (110), Expect = 3e-16
Identities = 214/317 (68%), Gaps = 7/317 (2%)
Strand=Plus/Minus
Query 21922 ATCTAGAGATTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 21981
||||| | ||| ||||| | | |||||| ||| |||| |||| | | || ||||| ||
Sbjct 2321 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGC 2262
Query 21982 TATTCTATCCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCC 22041
|||| ||| || | || || | ||| | | ||| ||| ||||| || | || ||
Sbjct 2261 AATTCGATCATCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACC 2202
Query 22042 TATATTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 22098
| | |||| ||||||||||| ||||| ||||| |||||| ||| || | ||||
Sbjct 2201 AACACTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGC 2142
Query 22099 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAAT 22158
| || ||||| | ||||||| ||| |||||||| ||| | | || |||
Sbjct 2141 AGCCAAGCCAGAACGTGGAGCTACTCTCCCATAGCACCCAGAAGGAAGAGCTATCTGAAT 2082
Query 22159 ATCTGTCTTAATTAATTGTCTTTCTCC--TGGAGGGATAGTATAATCATAAGCGCTATAT 22216
||||| || | | | |||||||| || || | || |||||||| || | |||
Sbjct 2081 GTCTGTTTTCA--CAAGGGCTTTCTCCATAGGTGGCACTGTGTAATCATAGGCACCGTAT 2024
Query 22217 AAATCATATCCGGCGGC 22233
| ||||| || |||||
Sbjct 2023 AGGTCATAGCCCGCGGC 2007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590593844925120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |